PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC031977.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 30219.3 Da    PI: 5.1277
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC031977.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.31.9e-181151343
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                  i n+  r+ tf kR+ng++KK +ELS+LC++ev+ i++s+ 
  EcC031977.50 11 IANDAARKATFKKRKNGLMKKVSELSTLCGIEVCAIVYSPY 51
                  899************************************85 PP
2K-box13.43.3e-061081552572
         K-box  25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                   ++e e  q   R l+Ge+L+ L++ +L+ L   L+k   +i ++ ++l
  EcC031977.50 108 NREREIVQVMYRALVGEGLQGLTIVDLNDLGWMLDKTGDEIEERIKKL 155
                   34456788889*************************999999988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.325149IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-23185IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-24160IPR002100Transcription factor, MADS-box
CDDcd002663.53E-30285No hitNo description
PRINTSPR004041.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006574Biological Processvaline catabolic process
GO:0009409Biological Processresponse to cold
GO:0009733Biological Processresponse to auxin
GO:0009790Biological Processembryo development
GO:0003677Molecular FunctionDNA binding
GO:0003860Molecular Function3-hydroxyisobutyryl-CoA hydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MTRKKAALAY IANDAARKAT FKKRKNGLMK KVSELSTLCG IEVCAIVYSP YQAEPEVWPS  60
MLGARRAIAR FKNMSEMDQS KRMVNQQEFI RQRIVKAEEQ LKKQLRENRE REIVQVMYRA  120
LVGEGLQGLT IVDLNDLGWM LDKTGDEIEE RIKKLKKSAP SSEQAASAEP QADKAAPENH  180
AALNDFVAVE DVENHAALND FVAVEDVENH AALNDFVAVE AVENQPWYMD LLKPRNEGDA  240
VNLDRIDPMP SYPYGNPTPS WSDFYFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKAALAYIANDAARKATFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058573.11e-166PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A059C5011e-158A0A059C501_EUCGR; Uncharacterized protein
STRINGXP_010058573.11e-165(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-52AGAMOUS-like 80