PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032059.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family BES1
Protein Properties Length: 616aa    MW: 68249.4 Da    PI: 5.2164
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032059.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822144.68.8e-45742111131
        DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssasaspe 91 
                   gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gskp    ++a +  ss+ + ++
  EcC032059.50  74 GGARRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSKPIsgtSAAVTPPSSEMVLQQ 170
                   6899*****************************************************************9888999999754455555677778999 PP

        DUF822  92 sslq.sslkssalaspvesysaspksssfpspssldsisla 131
                   ++l+ ++  ss   spv+  ++++k + +p +s +ds s  
  EcC032059.50 171 APLTsLRGISSGYGSPVDYNASRMKGVYVPNSSPYDSSSRG 211
                   999888999**************************998764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.9E-3976207IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.69E-152257616IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.6E-169259616IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.3E-95265598IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.1E-60296310IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.1E-60317335IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.1E-60339360IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060343351IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007507.1E-60432454IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.1E-60505524IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.1E-60539555IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.1E-60556567IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.1E-60574597IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0040034Biological Processregulation of development, heterochronic
GO:0090213Biological Processregulation of radial pattern formation
GO:0016592Cellular Componentmediator complex
GO:0001104Molecular FunctionRNA polymerase II transcription cofactor activity
GO:0005089Molecular FunctionRho guanyl-nucleotide exchange factor activity
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MATDMQRLVG TSEDEDEEDI EMDVKEEDDD EDDDMEKHIA TPPLVGVDGL MGSSSNNSRF  60
HHPQIHEQGS NPGGGARRSR PLEEKERTKL RERHRRAITA RILAGLRRHG NYNLRVRADI  120
NDVIAALARE AGWVVLPDGT TFPSRSQGSK PISGTSAAVT PPSSEMVLQQ APLTSLRGIS  180
SGYGSPVDYN ASRMKGVYVP NSSPYDSSSR GQSQISSGLG DGGEPLNTQA IIGGSVESVD  240
AKQIVDVPSK LPERDFAATP YIPVYVMLPL GVVNVKSELV DPDGLLKQLR ILKSLNVDGV  300
TVDCWWGVVE AHAPQEYNWN GYRRLFQMVH ELKFKLQVIM SFHECGGNVG DDVCIPLPHW  360
VAEIGRSNPD IFFTDREGRR NPECLSWGID KERVLRGRTA VEVYFDYMRS FRAEFNDYFE  420
DGIISMIGIG LGPCGELRYP SNAVKNGWRY PGIGEFQCYD QYLLKNLRKA AEARGQAFWA  480
RGPDNAGSYN SQPQETGFFC DGGDYDGYFG RFFLKWYSQV LIDHGDRVLA LAKLAFDGTC  540
IAAKLSGIYW WYRTASHAAE STAGFYNPSN RDGYATIAAM LKKHGAALNF TCAQLHVLDQ  600
QDFSSALADP DGLAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1q6d_A1e-13226161611365beta-amylase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055132.10.0PREDICTED: beta-amylase 7 isoform X3
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A059BZG70.0A0A059BZG7_EUCGR; Beta-amylase
STRINGXP_010055132.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]