PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032382.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 136aa    MW: 15935.7 Da    PI: 10.3737
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032382.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.41.2e-251059251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  ri +   rqvtf kRr+g+lKKA+ELS+LCdae+ viifs tgklyey+s
  EcC032382.10 10 RITSPKSRQVTFFKRRTGLLKKAKELSILCDAEIGVIIFSCTGKLYEYAS 59
                  7899999*****************************************86 PP
2K-box64.63.6e-22591233498
         K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   + R+l+Ge+L++Lsl++L++Le+ Le +lk++Rs+K++ ++e+++el++k ++ ++en +Lrkkl
  EcC032382.10  59 STRQLMGEELSKLSLEDLKNLENVLEMGLKNVRSRKDQTFMEEMRELKRKADDFEQENVELRKKL 123
                   57*************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.74161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-25369IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-252338IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.91937129IPR002487Transcription factor, K-box
PRINTSPR004042.6E-253859IPR002100Transcription factor, MADS-box
PfamPF014869.0E-2058123IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MVKGKIAIRR ITSPKSRQVT FFKRRTGLLK KAKELSILCD AEIGVIIFSC TGKLYEYAST  60
RQLMGEELSK LSLEDLKNLE NVLEMGLKNV RSRKDQTFME EMRELKRKAD DFEQENVELR  120
KKLRVLSRDH REIKGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-18160160MEF2C
5f28_B8e-18160160MEF2C
5f28_C8e-18160160MEF2C
5f28_D8e-18160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029957.14e-80PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_018717821.14e-80PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_018717822.14e-80PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotA2RVQ52e-41AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A368UI612e-50A0A368UI61_SOYBN; Uncharacterized protein
STRINGXP_010029957.11e-79(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-33AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]