PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC032446.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 769aa MW: 89024.7 Da PI: 7.9388

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC032446.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.1	7e-19	56	130	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA++vGF++r + ++s+ +g++ +r+fvC keg++ + +rtgC a ++vkk+++gkw+++++ ++HnH+l EcC032446.10 56 FYGNYASRVGFRIRSGQLYRSRVDGSVCNRRFVCWKEGFQIN--------------SRTGCPAFVRVKKSDSGKWVLDQFAKDHNHDLD 130 9************************************865..............589*************************996 PP
2	FAR1	66.9	5.1e-21	209	284	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y++YA +vGF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++k++++g+w v++ +leHnHel EcC032446.10 209 QYYDTYAGNVGFRVRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRHDNGRWIVDRYQLEHNHELE 284 69************************************999..............4899*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-15	56	130	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.0E-16	209	284	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-29	382	474	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.84	655	691	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-5	661	688	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-5	666	693	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence Send to blast
MLSCLLYFLI SGTALKTEEC LVMYVRGISM GVGEEEFEHE PYVGLEFDTA DDARIFYGNY 60 ASRVGFRIRS GQLYRSRVDG SVCNRRFVCW KEGFQINSRT GCPAFVRVKK SDSGKWVLDQ 120 FAKDHNHDLD TCEESHPANS RCKSSATTAQ VVDLCRKPQI KQLDVVDNGC SSSSSIFSAK 180 RIKPGANEGL VKFEPYVGLK FDSANEAYQY YDTYAGNVGF RVRIGQLFRS KNDGSITSRR 240 FVCSKEGFQH PSRVGCGAFM RIKRHDNGRW IVDRYQLEHN HELEMQMKAN RGSASRKLLD 300 EINETSEKLD IAKKHNGSLV KKRHANNIGS DWYTMLHNYF QNRQAEDIGF FYAVDVQMGC 360 CRSIFWADGR SRFSCSQFGD AIIFDTSYKQ NNYVVPFATF VGVNHHKQPV LLGCALVANE 420 SKESYIWLFE TWLRAMSGCH PKSIIADHDD SILQAIAQVF PSSHHRFSMW QIKTKEREHL 480 SPLSSDYKYE YEKCVYQSHT VGEFDAAWDA LLSKYSLREN AWLKEMYEKR ENWVPLYLRG 540 TFFAGIPIDG RDAFFDPYLN SQTSLEEFVM RYEQGLEQRR GNERKEDYNS FNLQAYLQTN 600 EPMEEQCRRL YTLSVFKVFQ RELLQSYSYL GAKIHEQGAI CRYLIRKCGD ENEKHIVTFC 660 SSNLDVSCGC QMFESEGVLC RHALRLFQIL DIRELPSRYI LHRWTRSAEY GTVRDFESGG 720 SSHEIKAKMV WSLREIAAKY VEFGATSFEK YKLAYEIMHE GGRKLCWQR

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence Send to blast

MLSCLLYFLI SGTALKTEEC LVMYVRGISM GVGEEEFEHE PYVGLEFDTA DDARIFYGNY  60
ASRVGFRIRS GQLYRSRVDG SVCNRRFVCW KEGFQINSRT GCPAFVRVKK SDSGKWVLDQ  120
FAKDHNHDLD TCEESHPANS RCKSSATTAQ VVDLCRKPQI KQLDVVDNGC SSSSSIFSAK  180
RIKPGANEGL VKFEPYVGLK FDSANEAYQY YDTYAGNVGF RVRIGQLFRS KNDGSITSRR  240
FVCSKEGFQH PSRVGCGAFM RIKRHDNGRW IVDRYQLEHN HELEMQMKAN RGSASRKLLD  300
EINETSEKLD IAKKHNGSLV KKRHANNIGS DWYTMLHNYF QNRQAEDIGF FYAVDVQMGC  360
CRSIFWADGR SRFSCSQFGD AIIFDTSYKQ NNYVVPFATF VGVNHHKQPV LLGCALVANE  420
SKESYIWLFE TWLRAMSGCH PKSIIADHDD SILQAIAQVF PSSHHRFSMW QIKTKEREHL  480
SPLSSDYKYE YEKCVYQSHT VGEFDAAWDA LLSKYSLREN AWLKEMYEKR ENWVPLYLRG  540
TFFAGIPIDG RDAFFDPYLN SQTSLEEFVM RYEQGLEQRR GNERKEDYNS FNLQAYLQTN  600
EPMEEQCRRL YTLSVFKVFQ RELLQSYSYL GAKIHEQGAI CRYLIRKCGD ENEKHIVTFC  660
SSNLDVSCGC QMFESEGVLC RHALRLFQIL DIRELPSRYI LHRWTRSAEY GTVRDFESGG  720
SSHEIKAKMV WSLREIAAKY VEFGATSFEK YKLAYEIMHE GGRKLCWQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036050.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Refseq	XP_018723582.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Refseq	XP_018723583.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2P2JED2	0.0	A0A2P2JED2_RHIMU; Protein FAR1-RELATED SEQUENCE 7-like isoform X1
STRING	XP_010036050.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]