PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032657.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 93aa    MW: 10639.5 Da    PI: 6.4899
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032657.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.12.6e-17770161
           NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka....eekewyfF 61
                  lp+GfrFhPtd+elv++yL +k++++ + +  +++e+d+yk++Pw+Lp ++k      +k + fF
  EcC032657.20  7 LPAGFRFHPTDDELVNHYLLPKCASQAIGV-PIVAEIDLYKFDPWQLPGAYKVpifsCSKVVIFF 70
                  799************************999.78***************53322223233455666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-19361IPR003441NAC domain
PROSITE profilePS5100517.67793IPR003441NAC domain
PfamPF023651.2E-8861IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048544Biological Processrecognition of pollen
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MKAELNLPAG FRFHPTDDEL VNHYLLPKCA SQAIGVPIVA EIDLYKFDPW QLPGAYKVPI  60
FSCSKVVIFF SWCVIVKSWL FGWFVSFLQV IDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-222531061Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025735.12e-30PREDICTED: NAC domain-containing protein 2
SwissprotQ8H1152e-23NA102_ARATH; NAC domain-containing protein 102
TrEMBLA0A059B8X34e-29A0A059B8X3_EUCGR; Uncharacterized protein
STRINGXP_010025735.16e-30(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.19e-26NAC domain containing protein 102
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]