PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032811.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 279aa    MW: 31857.8 Da    PI: 9.6293
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032811.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000447394223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C++C++ F ++ n+krH r+H
  EcC032811.10 73 RCNKCHREFFSSINYKRHVRVH 94
                  7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8897299IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-474104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807495IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0016567Biological Processprotein ubiquitination
GO:0005886Cellular Componentplasma membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0004672Molecular Functionprotein kinase activity
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSVAKVKTSN ALDGMKVEDR NDSLNYIRQA IGKEPLLSLP RSGDNSFQWI HPLLQALDHQ  60
DLPGWPLKIP MQRCNKCHRE FFSSINYKRH VRVHHRLRKL DKDSSKNRDL LGPFWDKLSA  120
EEAKEIVSLK NSTMEDVPGT TVIKSLASLI RKPGFPVMPQ FCLKAGSSLL DIVQPRSSRF  180
PLSSQDLFGI LDDASEKTFL RGPTLLMRRY IFDKEVGKIG LDPKNLVAFT CFMLEQKLVE  240
AWLADKDAEA LRFQKLLVEE EEAAQRRQAE ILEGRDKKG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039737.10.0PREDICTED: uncharacterized protein LOC104428444
RefseqXP_018715807.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104415429
TrEMBLA0A058ZXJ00.0A0A058ZXJ0_EUCGR; Uncharacterized protein
STRINGXP_010025018.10.0(Eucalyptus grandis)
STRINGXP_010039737.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.14e-81C2H2-like zinc finger protein