PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC033088.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 220aa MW: 25257.7 Da PI: 8.4867

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC033088.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	96.6	2.8e-30	50	137	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA ++GF +r+++ ++s r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka+++vkk+k+gkw+vtk+ +eHnH+l EcC033088.20 50 FYDTYAAHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKSRPRR-SENRKPRAITREGCKAMIVVKKDKTGKWVVTKFIKEHNHPLI 137 9*****************************************99.9*************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-28	50	137	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0005506	Molecular Function	iron ion binding
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	Molecular Function	heme binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MLAVDERPSV VEDGDAIECS SGKDTPNEES SDMEPHVGME FESEEAAKVF YDTYAAHMGF 60 IMRVDAFRRS MRDGKVVWRR LVCNKEGFRK SRPRRSENRK PRAITREGCK AMIVVKKDKT 120 GKWVVTKFIK EHNHPLIAAP ANSHRSVLLS QTPDEKDVKI RELTAELQRE RKRSATYLEE 180 LEMVLRDMEE HSGHLSKSIE DIVKSVREID SRRAPVSSSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036738.1	1e-151	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	8e-31	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A059A3W6	1e-150	A0A059A3W6_EUCGR; Uncharacterized protein
STRING	XP_010036738.1	1e-151	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-88	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]