PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033144.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 244aa    MW: 28268.6 Da    PI: 5.469
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033144.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.5e-14139183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+  E+el++++ +++G+g+Wk+I+r   k+R + q+ s+ qky
     EcC033144.10 139 AWSRKEHELFLEGLEKYGKGDWKSISRNCVKTRNPTQVASHAQKY 183
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.6462680IPR017877Myb-like domain
SMARTSM007173.0E-43082IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-53386IPR009057Homeodomain-like
CDDcd001672.36E-43480No hitNo description
Gene3DG3DSA:1.10.10.602.8E-10131186IPR009057Homeodomain-like
PROSITE profilePS5129417.189132188IPR017930Myb domain
SuperFamilySSF466892.44E-16132189IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-14135186IPR006447Myb domain, plants
SMARTSM007176.9E-9136186IPR001005SANT/Myb domain
CDDcd001673.75E-9139184No hitNo description
PfamPF002492.4E-10139183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042256Biological Processmature ribosome assembly
GO:0003677Molecular FunctionDNA binding
GO:0043022Molecular Functionribosome binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MESQYFFEVT PPGYSYLTYL LSPPTPPEPI EDHWTSEENE IFERCIAELD HLSRDFFENI  60
ALRIPEKSVG QIQRHFEALV KDVENIDAGR VPIPDYDGSE SKVDEKEKPS DEPEKEKPSD  120
EPLEEDHSTP QTTKKRGIAW SRKEHELFLE GLEKYGKGDW KSISRNCVKT RNPTQVASHA  180
QKYFKRLKNN SDRRRFSRLI DPLALPSSSE AIDRPSILMP SLQLASIVSR RRIGYSLSYY  240
QSYS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034716.11e-173PREDICTED: transcription factor DIVARICATA-like
STRINGXP_010034716.11e-173(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-39MYB family protein