PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033226.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 714aa    MW: 78443.5 Da    PI: 6.0156
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033226.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.31.7e-151391856
                  HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  EcC033226.10  1 LFKECPHPDDKQRMRLSQELGLKPRQVKFWFQNRRTQMK 39
                  69**********************************998 PP
2START155.54.4e-491894182206
                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                   la + ++el k+ la+ep+Wv+ss  e g++vl  +e ++                 + ea+r+s+vv+m++ +lv  ++d + +W   ++    +a
  EcC033226.10 189 LAMSSMEELSKMCLASEPLWVQSS--ESGKVVLNFEEHARLfpwplnnnlkqnsdkLRKEASRDSAVVIMNSITLVDAFMDAG-KWMDLFPtivsRA 282
                   677899******************..777777776666555*************99999************************.99888888888** PP

                   EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
         START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwv 167
                   + ++vi sg      g l lm+aelq+lsp+vp R+ +f+Ry++q   +g+w+ivd   ds  ++    +s+ R  + pSg++i++++ng+s+vtwv
  EcC033226.10 283 KNIQVIASGvagharGSLNLMYAELQVLSPMVPtRETYFLRYCQQnVDEGSWAIVDFPMDSLHNNLAsPPSMPRYIRQPSGCVIQDMPNGYSRVTWV 379
                   *********************************************9999*******999999888776678889999******************** PP

                   E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
         START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                   eh++ ++++ h l+ ++vk g+a+ga +w+a lqrqce+
  EcC033226.10 380 EHAEIEEKVGHPLFSQFVKCGMAFGAHRWLAVLQRQCER 418
                   *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.9141IPR001356Homeobox domain
PfamPF000465.5E-13139IPR001356Homeobox domain
SMARTSM003892.4E-4145IPR001356Homeobox domain
SuperFamilySSF466895.43E-13246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-15247IPR009057Homeodomain-like
CDDcd000865.80E-14242No hitNo description
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
PROSITE profilePS5084843.642179421IPR002913START domain
SuperFamilySSF559618.1E-31182420No hitNo description
CDDcd088752.52E-109183417No hitNo description
SMARTSM002345.2E-34188418IPR002913START domain
PfamPF018521.6E-41189418IPR002913START domain
SuperFamilySSF559619.89E-16457674No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
LFKECPHPDD KQRMRLSQEL GLKPRQVKFW FQNRRTQMKA QQDRADNAIL RAENDNLKNE  60
NYRLQAALRN IVCPNCGGPG MLGEMGFDEQ QLRIENARLK EELERVCCLA SRYSGQQIQS  120
IPVLPPLSLL PPSLDLEMTI YPPRHFPEAM SSCSDIMPMP LLPQDTPHHL SESTGLILME  180
DEKALALELA MSSMEELSKM CLASEPLWVQ SSESGKVVLN FEEHARLFPW PLNNNLKQNS  240
DKLRKEASRD SAVVIMNSIT LVDAFMDAGK WMDLFPTIVS RAKNIQVIAS GVAGHARGSL  300
NLMYAELQVL SPMVPTRETY FLRYCQQNVD EGSWAIVDFP MDSLHNNLAS PPSMPRYIRQ  360
PSGCVIQDMP NGYSRVTWVE HAEIEEKVGH PLFSQFVKCG MAFGAHRWLA VLQRQCERVA  420
SLMARNISDL GVIPSPEARK NLMRLAQRMI RTFSTNISTS GGQSWTALSD SSDDTVRITT  480
RKITEPGQPN GVVLAAVSTT WLPYPHHHVF ELLKDERRRS QLDVLSNGNS LQEVAHIANG  540
SHPGNCISLL RINVASNSSQ HVELMLQESC TDASGSLVVY STIDVDSIQL AMNGEDPSHL  600
PLLPIGFSIV PFGSGSPGSD SGANDNLGLD ACPQGEGCLL TVGLQVLAST IPTAKLSLSS  660
VNAINNHLCM AVHQITAALA SSSSNGNSSP APCNVPELAV GPCPDPTDAK QISA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053633.10.0PREDICTED: homeobox-leucine zipper protein HDG5
RefseqXP_018727880.10.0PREDICTED: homeobox-leucine zipper protein HDG5
SwissprotQ336P20.0ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A059CHR50.0A0A059CHR5_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010053633.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]