PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC033227.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 157aa MW: 17494.9 Da PI: 8.4927

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC033227.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.7	2.2e-39	7	107	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk+lrr+C++dC+++pyfp+++p++fa+vh+++Gasnv k+++++p++ r ++++sl++e+++r++dPvyG+vg+i+ l+ q++++++ela++ EcC033227.10 7 RCAACKYLRRRCPPDCIFSPYFPSNDPQRFACVHRIYGASNVGKMIQQTPTQMRAQVADSLYFESRCRIQDPVYGCVGIISLLHLQIHNAESELAKV 103 6************************************************************************************************ PP DUF260 98 keel 101 k+++ EcC033227.10 104 KAQI 107 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.009	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-38	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MSTISSRCAA CKYLRRRCPP DCIFSPYFPS NDPQRFACVH RIYGASNVGK MIQQTPTQMR 60 AQVADSLYFE SRCRIQDPVY GCVGIISLLH LQIHNAESEL AKVKAQIAFL NSDANREPSF 120 RPQLEGASNV NNLWSGQSSV EQHQIGSSTT HGPLAFM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-35	8	100	12	104	LOB family transfactor Ramosa2.1
5ly0_B	5e-35	8	100	12	104	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010025110.1	1e-115	PREDICTED: LOB domain-containing protein 24
Swissprot	P59468	3e-52	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A059DJZ9	1e-113	A0A059DJZ9_EUCGR; Uncharacterized protein
STRING	XP_010025110.1	1e-114	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-54	LOB domain-containing protein 24