PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033290.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 607aa    MW: 65451.3 Da    PI: 5.9862
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033290.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.51.9e-25159209152
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                   kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ+
  EcC033290.10 159 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQR 209
                   79*******************.*****************************7 PP
2Response_reg55.43.5e-1928428109
                   EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  28 eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   ++++++ al+ll+ek+  +D++l D+ mp+mdG++ll++   e  +lp+i++++ g+ + + + ++ Ga d+l Kp+ peel +
  EcC033290.10   2 TCAQATVALNLLREKKgcFDIVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSGDGSTNAVMRGIRHGACDYLIKPIRPEELQN 84 
                   6778999*******999***********************6644.8***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001561.02E-19189No hitNo description
PROSITE profilePS5011032.649190IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23004.3E-291108No hitNo description
SMARTSM004480.0035186IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.17E-24297IPR011006CheY-like superfamily
PfamPF000721.3E-15384IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS512949.831156215IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-26156209IPR009057Homeodomain-like
SuperFamilySSF466893.94E-16156209IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-22159209IPR006447Myb domain, plants
PfamPF002492.0E-6161209IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
TTCAQATVAL NLLREKKGCF DIVLSDVHMP DMDGYKLLEH VGLEMDLPVI MMSGDGSTNA  60
VMRGIRHGAC DYLIKPIRPE ELQNIWQHVV RKKWNGNKEI EHSGSLEDND RHKRGSDDAD  120
GSAVNEGGEG LLKNQKKRSI AKEEDEPELD SDDPTTSKKP RVVWSVELHQ QFVSAVNQLG  180
IDKAVPKRIL ELMNVPGLTR ENVASHLQRL SGVAQQQGGI SSSFCGTVES NIKLGPLGRY  240
DIQALAASGQ ISPQALAALQ SELLGRPTSN LVLPSFDQPT LLQASLQGSK CLPVEHGVAF  300
GQPLIKCPSN VSKQYQQSIL SSQDAPSGFG PWQATSLSTV GNNNIVAGSN IQSNNTLMDI  360
FQRQQQYQQK QQLQQQQQQQ QQQQQQLPQQ PLLEPSRLIN VQPSCLVVPH SSAGFQAAGS  420
PTSVNQSSTY NRSAVIDYSL PSYQGNTALN TGLASDKDLK TSGVLGGYSV QGSISPTLSS  480
SSANADSSNC CPLRNPSAKY NIIGQAPGVV SDFSNIQGSY DAKSGEAIDQ GLLKNLGFVS  540
KGSGTPSLFT VDEFGPPLKQ IYSGKVHLES SAGRVKQEPS FDFVDAKVSI PVLEQLSSND  600
LMSVFTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19155210156ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066564.10.0PREDICTED: two-component response regulator ORR21 isoform X1
RefseqXP_018733087.10.0PREDICTED: two-component response regulator ORR21 isoform X1
TrEMBLA0A059BEG20.0A0A059BEG2_EUCGR; Uncharacterized protein
STRINGXP_010066564.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.16e-95response regulator 2