PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC033300.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HB-other

Protein Properties

Length: 191aa MW: 21965.1 Da PI: 9.0247

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC033300.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62	9.2e-20	18	76	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ EcC033300.10 18 KYVRYTPEQVEALERVYNECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 76 6789*****************************************************97 PP
2	bZIP_1	20.9	7.8e-07	70	113	18	61
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 rr+R++ ++e +L++ +L+a Nk L +e+++l+k+v++l EcC033300.10 70 RRCREKQRKEAYRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVY 113 9***************************************9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.661	13	77	IPR001356	Homeobox domain
SMART	SM00389	6.0E-15	15	81	IPR001356	Homeobox domain
CDD	cd00086	8.44E-15	18	78	No hit	No description
Pfam	PF00046	2.5E-17	18	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-17	18	81	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.8E-20	20	76	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MALAMHRECS SKQMDASKYV RYTPEQVEAL ERVYNECPKP SSLRRQQLIR ECPILCNIEP 60 KQIKVWFQNR RCREKQRKEA YRLQTVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENGYMRQ 120 QLHSASTATT DNSCESVVMS GQHQQQHNPT PQHPEKDASS PAGLLAIAAE TLTQFLAKAT 180 GTAVDWVQMI G

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010051960.1	1e-133	PREDICTED: homeobox-leucine zipper protein HOX32 isoform X2
Swissprot	A2XK30	1e-105	HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
Swissprot	Q6AST1	1e-105	HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBL	A0A059CBP7	1e-133	A0A059CBP7_EUCGR; Uncharacterized protein
TrEMBL	A0A059CBZ9	1e-132	A0A059CBZ9_EUCGR; Uncharacterized protein
TrEMBL	A0A059CC05	1e-134	A0A059CC05_EUCGR; Uncharacterized protein
TrEMBL	A0A059CC72	1e-132	A0A059CC72_EUCGR; Uncharacterized protein
STRING	XP_010051959.1	1e-131	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18074	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	2e-99	HD-ZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Li YY, et al. Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice. Rice (N Y), 2016. 9(1): p. 46 [PMID:27624698]