PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033785.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Whirly
Protein Properties Length: 123aa    MW: 13566.8 Da    PI: 10.3438
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033785.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly59.19.3e-1957110254
        Whirly   2 vyktkaalkvkavrptfealdsgn.lklkraGglllelanataerkydWekkqs 54 
                   vyk+kaal++ +v+ptf++l+sg+ lk++r+G ++l++ +a++erkydWek+q+
  EcC033785.30  57 VYKGKAALSLSPVLPTFSKLESGAgLKVDRHGVMMLRFWPAIGERKYDWEKRQV 110
                   9*********************97589************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.1E-2345110IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.67E-1849110IPR009044ssDNA-binding transcriptional regulator
PfamPF085366.9E-1957110IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MVNRMDLSGR NLLGDALCCR VSSFNHSRIS GAGYSTAGQN FNAAGGTINR IFAPYCVYKG  60
KAALSLSPVL PTFSKLESGA GLKVDRHGVM MLRFWPAIGE RKYDWEKRQV SIGLFIKLIF  120
SYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A3e-2644110469StWhy2
3n1i_A3e-2644110469protein StWhy2
3n1j_A3e-2644110469Protein StWhy2
3n1k_A3e-2644110469protein StWhy2
3n1l_A3e-2644110469protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035836.13e-72PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0344e-30WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A059A0P82e-71A0A059A0P8_EUCGR; Uncharacterized protein
STRINGXP_010035836.11e-71(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-27WHIRLY 2