PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033786.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 439aa    MW: 48783.3 Da    PI: 7.7175
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033786.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
     EcC033786.10 14 KGLWSPEEDEKLLNYITNHGHGCWSAVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding47.63.9e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E+ l++++++ lG++ W+ Ia++++ gRt++++k++w++
     EcC033786.10  67 RGAFSHQEENLIIELHAVLGNR-WSQIAARLP-GRTDNEIKNFWNS 110
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-27664IPR009057Homeodomain-like
PROSITE profilePS5129417.799961IPR017930Myb domain
SuperFamilySSF466891.28E-2812108IPR009057Homeodomain-like
SMARTSM007172.3E-121363IPR001005SANT/Myb domain
PfamPF002491.5E-151461IPR001005SANT/Myb domain
CDDcd001673.39E-111761No hitNo description
PROSITE profilePS5129425.42862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2565116IPR009057Homeodomain-like
SMARTSM007174.8E-1566114IPR001005SANT/Myb domain
PfamPF002493.1E-1467110IPR001005SANT/Myb domain
CDDcd001671.18E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT NHGHGCWSAV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SHQEENLIIE LHAVLGNRWS QIAARLPGRT DNEIKNFWNS SLKKKLRQGG  120
IDPTTHKPLS EVADENDHKD KDKPIIPSIT QHNNNDHHHQ KSSSTAASCK KATLFEPALN  180
TDNLKVHHQQ HSLEVPASSE MRPYSEMFMK DFTFQQLSMN YGTSLGLPAS LHLSSNTLCF  240
DPRSSSENIM SQFSSDMSTP NIISPTMSSS SNAVPVTSAR VKPSISLPAE AAFMVNNGVP  300
SWEASPGNNN CSSGSTNGNG LVSNNSSINN TAFFESNNCF SWGLGEGTNA SKFEKHVPFH  360
HPIGSNTTEE NSGKWSEYLQ LPILFGSLTQ NNDEASHHHQ PVSHFHLMDG LNNIPSWQQK  420
HHQQANLDTF AAPVLGQTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070106.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A059AY600.0A0A059AY60_EUCGR; Uncharacterized protein
STRINGXP_010070106.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.14e-92myb domain protein 61