PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033786.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 645aa    MW: 69431.4 Da    PI: 6.8226
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033786.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.8e-16433479455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  EcC033786.20 433 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 479
                   6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.03E-17425483No hitNo description
SuperFamilySSF474591.02E-20426488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-14433479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-20433487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18435484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MAFNFVRRPA NELVELTWEH GQVVLQGQSS RAKRGPFSNN TPSNGSKPRE GASDDDTRLR  60
PGKFRNLECV LSEFPVTEQS SEIGLGQEDD MVPWLSFPVT GSLQNDYCSD LLTELTAVAA  120
NGTSPGNDDK SSSQIDRESH GIDNGVRSLG QTDASKFSSS AAGETTINRT GSNQLYSLPN  180
QQFLSPLPCF RSRALDDVST STSSSVSLAV CGDKAGLPTS VVACSTVKVQ RQQDLGHSDK  240
SSCFTNFSCF SRPASIYRVN NAESSGQTAG FGLSGVDRSV SKEKASFNDN STLSGSNFAV  300
SSDGLQKQRK IDSSKPFDRK QYEHKFSGGQ SEAICQENTC KNAKHSCQNY QASVCKGSTE  360
REKTTEHVGG SSSVCSGNSV ERVLDDPKSN LKRKSLETDE SDGPSEDIEE DPTREKKQNS  420
AQGTSKRSRA AEVHNLSERR RRDRINEKMR ALQELIPNCN KVDKASMLDE AIEYLKTLQL  480
QVQMMSMGAG LYIPPMMVPT GMHPAQMPHF PPFGIGMGSA IGFGMGMVDM SGRSSGRPVV  540
PVPPMQGPHF PSPLISAGMA GVNLQMFNFP GQGTPLPRPC APLVPFPGGP VMKPAVGLGV  600
YGMPTSTENS DSAVASRSKE AMQSIDQEPL QNTASICLKN QSSNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1437442ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018717209.10.0PREDICTED: transcription factor PIF3 isoform X2
TrEMBLA0A059AXT10.0A0A059AXT1_EUCGR; Uncharacterized protein
STRINGXP_010070103.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-42phytochrome interacting factor 3