PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033988.90
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 487aa    MW: 52785 Da    PI: 8.4718
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033988.90genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-06121142223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   +C +CgksF++  +L  H+r+H
  EcC033988.90 121 TCVICGKSFPSIKSLYGHMRSH 142
                   7********************9 PP
2zf-C2H214.40.00011380402123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC++C+ksFs++  L  H ++H
  EcC033988.90 380 FKCSICNKSFSSHQALGGHKSSH 402
                   89**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.0165784IPR007087Zinc finger, C2H2
SMARTSM003551.35779IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-45979IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM003550.0049120142IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993120147IPR007087Zinc finger, C2H2
SuperFamilySSF576675.7E-9121142No hitNo description
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
PfamPF139121.9E-7122144IPR007087Zinc finger, C2H2
SuperFamilySSF576675.7E-9375402No hitNo description
PfamPF139121.3E-10379404IPR007087Zinc finger, C2H2
SMARTSM003550.0068380402IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094380407IPR007087Zinc finger, C2H2
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015979Biological Processphotosynthesis
GO:0009522Cellular Componentphotosystem I
GO:0003723Molecular FunctionRNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0005515Molecular Functionprotein binding
GO:0016168Molecular Functionchlorophyll binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MEEDLHRETK LMASSGVLYI KLNIQKAQCS SEKDGGSSYE EEDDHAEYPA ASESTSPVCM  60
FCRKGFSSGK ALGGHMRIHA QSTKEPLRKK IHGRKIKRSG TKNNSRRSSA TMAGGQDDHQ  120
TCVICGKSFP SIKSLYGHMR SHPEREWRGI QPPSAAAAKQ SSPSTVSDSV VVRKADDDQI  180
GSDDDAKERS SGAVDLSKSV PGWGVTAKRG KKAGTPSVAG SGSGSGLGSR SGSGEGVGLD  240
AQVQEALVML ADGNPPSKVS PLIRPRIDAT TDDKDEHKME ENCKANSCIG SYSGIEARNC  300
SAIAENKEVE AFSETELKPK EPVNMMMNRV KEERVQRSYY KLGSKLKKMR RIKRFRDLEE  360
LHADYDVQNR IVDPATPGRF KCSICNKSFS SHQALGGHKS SHSKPTKNSQ TIRRDRETVS  420
AEFSAVPGSY RLDADLSTPL SQVANSPSAI GEMSSKVLDF DLNELPPMED DKERVVGLGT  480
DSGHCSG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063207.10.0PREDICTED: uncharacterized protein LOC104450381
TrEMBLA0A059BWR30.0A0A059BWR3_EUCGR; Uncharacterized protein
STRINGXP_010063207.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.15e-15C2H2 family protein