PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC034086.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 485aa MW: 56054.6 Da PI: 8.1378

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC034086.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.4	3.1e-20	24	107	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y +YA GF vrk++ ++ r+geit+rtfvC++eg++ +++++ +++ +r+e r+gC a++k k + +g++ev++ ++ HnH++ EcC034086.30 24 YVAYAIGKGFGVRKDNLLRN-RKGEITRRTFVCNCEGHPINSSDQ--EKKFQRSEVRCGCPARIKFKVD-NGVYEVIEYVSTHNHSFI 107 99*************999.7788**********999877..9999*************9.*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-18	24	107	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-32	229	323	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005509	Molecular Function	calcium ion binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
DMEKDYEFAI GMVFSNELEA YHTYVAYAIG KGFGVRKDNL LRNRKGEITR RTFVCNCEGH 60 PINSSDQEKK FQRSEVRCGC PARIKFKVDN GVYEVIEYVS THNHSFIPEG QKHMIRCGRM 120 ISDTCKGVIV DMIKAGIGGT STYKFLANEA GGSKNLGFNL CDCQNFLQTK RSNDISGGDC 180 QNVLNHFHRM QMEKPMFFYA VQVDQDGKMT NIFWRDSLSK YDYDCFGDVL VFDTTYRTNI 240 YNLICAPFVG VNHHWKNILF GCALLLDEIA ESFIWLFEVF LKSMGNKAPK TIFTDQDQAM 300 AKAIRIMFPN TQHRLCTWHI GKNAHQNIPD LYRNPGFKDK YFSTLMYRCR SEDEFESTWK 360 EMEDEWGTKN NNSLQRLYNL RHKWSLAFGR DTFTCGITSS QRSESTNNVF QHTTTKTSSV 420 VALVHNYEEQ LKHIREIESQ DDYSSCGKPK LQVFKNGILG HAAKVYTRTI FKKFNVEFVQ 480 SLGEQ

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

DMEKDYEFAI GMVFSNELEA YHTYVAYAIG KGFGVRKDNL LRNRKGEITR RTFVCNCEGH  60
PINSSDQEKK FQRSEVRCGC PARIKFKVDN GVYEVIEYVS THNHSFIPEG QKHMIRCGRM  120
ISDTCKGVIV DMIKAGIGGT STYKFLANEA GGSKNLGFNL CDCQNFLQTK RSNDISGGDC  180
QNVLNHFHRM QMEKPMFFYA VQVDQDGKMT NIFWRDSLSK YDYDCFGDVL VFDTTYRTNI  240
YNLICAPFVG VNHHWKNILF GCALLLDEIA ESFIWLFEVF LKSMGNKAPK TIFTDQDQAM  300
AKAIRIMFPN TQHRLCTWHI GKNAHQNIPD LYRNPGFKDK YFSTLMYRCR SEDEFESTWK  360
EMEDEWGTKN NNSLQRLYNL RHKWSLAFGR DTFTCGITSS QRSESTNNVF QHTTTKTSSV  420
VALVHNYEEQ LKHIREIESQ DDYSSCGKPK LQVFKNGILG HAAKVYTRTI FKKFNVEFVQ  480
SLGEQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056981.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A059C3I9	0.0	A0A059C3I9_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010056981.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-90	FAR1-related sequence 5