PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC034205.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HB-other

Protein Properties

Length: 1089aa MW: 122093 Da PI: 8.0907

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC034205.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.6	4.3e-13	7	56	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ql++Le+++ +++yp++++++ A++lgLt +qV+ WF +R ++k+ EcC034205.30 7 TPLQLRALERCYSEDQYPTQKAMKGYAASLGLTFKQVQGWFMEKRKRHKR 56 899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.0E-10	1	61	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.329	1	57	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-12	5	58	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.28E-11	5	58	IPR009057	Homeodomain-like
CDD	cd00086	5.76E-12	5	57	No hit	No description
Pfam	PF00046	1.5E-10	6	56	IPR001356	Homeobox domain
Pfam	PF05066	8.5E-8	461	528	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	6.8E-7	599	630	IPR028942	WHIM1 domain
Pfam	PF15613	1.2E-10	733	807	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1089 aa Download sequence Send to blast
MELKRKTPLQ LRALERCYSE DQYPTQKAMK GYAASLGLTF KQVQGWFMEK RKRHKRNGEA 60 PFCISAQDGA QSADSLPSTC GHLASTDANS REKSICLQDM LFSPDYILKK VFRKDGPVLG 120 VEFDSLPAGA FLHGSRNKLS CQQIHREPKK RKVSNGEIID GQDGFNSGPV KRHGMGKGLM 180 TVWRATNPDG GHFPTGVDIV RGAGALSKVS TSKSKKKSCQ GKINRQQTLA MIQRKIKEKS 240 SGKKKPLMKK KQKPLNQDSI PKETRKEKCD LALVGGITQE LLDKLALLVD DEEMEMRELR 300 AGPKPLCCSD HISSNGSHGC SLCKDLLAKF PPISVKMKQP FCMQPWDSLE MVKKLFKDSL 360 LLGKIHVALL KLLLLDVETE LTKGSFHHLS KSCKLLALLH SVENQDMIVD FWKKSLNPLT 420 WTEILRQVLV AAGFGSKKGT SHREAVSEEM SLMMKYGMRP GTLKGELFRL LSEQGNNGLK 480 VSEMARASQV MGLNISSNRE ELENAICSML SSDITLFEKI SSSTYRLRIN FASKDAEHLQ 540 SDTDDSGSVE NLDDDVCSGG DDSECDSVDL TVRKFKRANS HKSKNSMVML DTEIDESHPG 600 EVWLLGLMEG EYSDLSIEEK LNALVALIDL VRAGSTILME PEQNSSQVVS ETVPSSFYTG 660 SGAKIKRASS KQQNSLGSSW VHHEQRHGRN SSAEIQPIDS SALLSKLHNK QISSGKSTEA 720 KDVEIADYPH PMQSVYLGSD RRYNRYWLFL GPCNARDPGH RSVYFESSED GHWEIIDTKE 780 AFCSLLSVLD DRGAREALLI ESLEKRKAFI FQAMSSCIVS QADVRSGILS DVTELDSVRE 840 ESSSPISDVD NGTSLITSGD SFPSSGAITI EVGEKGEELK QRWSRLKAFD SWMWNFFYLA 900 LNAVRHRRKS YHDSLNRCER CHDLYWRDEK HCKICHTTFE LDFDLEERYA IHAATCREKE 960 ETDTFPKHRV LSSQLQSLKA AIHAIESAMP EDALIGAWTK SAHRLWVKRL RRTSSLAELL 1020 QVLADFVSAI NRDWLRQCNN VPCYNLSGEE IVAHFPIIPH TTSAVALWLV KMDMLVAPYL 1080 KTLRSDKNH

Sequence ? help Back to Top

Protein Sequence Length: 1089 aa Download sequence Send to blast

MELKRKTPLQ LRALERCYSE DQYPTQKAMK GYAASLGLTF KQVQGWFMEK RKRHKRNGEA  60
PFCISAQDGA QSADSLPSTC GHLASTDANS REKSICLQDM LFSPDYILKK VFRKDGPVLG  120
VEFDSLPAGA FLHGSRNKLS CQQIHREPKK RKVSNGEIID GQDGFNSGPV KRHGMGKGLM  180
TVWRATNPDG GHFPTGVDIV RGAGALSKVS TSKSKKKSCQ GKINRQQTLA MIQRKIKEKS  240
SGKKKPLMKK KQKPLNQDSI PKETRKEKCD LALVGGITQE LLDKLALLVD DEEMEMRELR  300
AGPKPLCCSD HISSNGSHGC SLCKDLLAKF PPISVKMKQP FCMQPWDSLE MVKKLFKDSL  360
LLGKIHVALL KLLLLDVETE LTKGSFHHLS KSCKLLALLH SVENQDMIVD FWKKSLNPLT  420
WTEILRQVLV AAGFGSKKGT SHREAVSEEM SLMMKYGMRP GTLKGELFRL LSEQGNNGLK  480
VSEMARASQV MGLNISSNRE ELENAICSML SSDITLFEKI SSSTYRLRIN FASKDAEHLQ  540
SDTDDSGSVE NLDDDVCSGG DDSECDSVDL TVRKFKRANS HKSKNSMVML DTEIDESHPG  600
EVWLLGLMEG EYSDLSIEEK LNALVALIDL VRAGSTILME PEQNSSQVVS ETVPSSFYTG  660
SGAKIKRASS KQQNSLGSSW VHHEQRHGRN SSAEIQPIDS SALLSKLHNK QISSGKSTEA  720
KDVEIADYPH PMQSVYLGSD RRYNRYWLFL GPCNARDPGH RSVYFESSED GHWEIIDTKE  780
AFCSLLSVLD DRGAREALLI ESLEKRKAFI FQAMSSCIVS QADVRSGILS DVTELDSVRE  840
ESSSPISDVD NGTSLITSGD SFPSSGAITI EVGEKGEELK QRWSRLKAFD SWMWNFFYLA  900
LNAVRHRRKS YHDSLNRCER CHDLYWRDEK HCKICHTTFE LDFDLEERYA IHAATCREKE  960
ETDTFPKHRV LSSQLQSLKA AIHAIESAMP EDALIGAWTK SAHRLWVKRL RRTSSLAELL  1020
QVLADFVSAI NRDWLRQCNN VPCYNLSGEE IVAHFPIIPH TTSAVALWLV KMDMLVAPYL  1080
KTLRSDKNH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036094.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
Refseq	XP_010036095.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X1
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	A0A059A2P3	0.0	A0A059A2P3_EUCGR; Uncharacterized protein
STRING	XP_010036094.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9638	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator