PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC034365.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 90aa    MW: 10150.4 Da    PI: 6.6545
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC034365.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000112042123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y C++Cg + s ks+ ++Hi++H
  EcC034365.10 20 YYCEYCGICRSKKSLITSHIQSH 42
                  89********************6 PP
2zf-C2H222.13.9e-076687223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C+ Cg +F+ + +L++H++ H
  EcC034365.10 66 TCEECGATFKKPAYLRQHMQGH 87
                  6******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-71887No hitNo description
PROSITE profilePS501578.6632048IPR007087Zinc finger, C2H2
SMARTSM00355182042IPR015880Zinc finger, C2H2-like
SMARTSM003550.0126587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3656590IPR007087Zinc finger, C2H2
PfamPF138949.6E-46687No hitNo description
Gene3DG3DSA:3.30.160.605.2E-56688IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MGEEESCEKP GPVFRDIRRY YCEYCGICRS KKSLITSHIQ SHHQDEVEAA MAQGVEGKEG  60
AKANNTCEEC GATFKKPAYL RQHMQGHSLE
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034379.11e-57PREDICTED: transcription factor IIIA
SwissprotQ84MZ43e-24TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A059DCN01e-55A0A059DCN0_EUCGR; Uncharacterized protein
STRINGXP_010034379.14e-57(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-26transcription factor IIIA