PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC034382.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 73aa    MW: 8042.02 Da    PI: 8.5069
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC034382.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000252143123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  + C++C+k Fs+   L  H r H
  EcC034382.10 21 HICSICHKDFSSGQALGGHKRAH 43
                  68**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-41943IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.98E-71949No hitNo description
PfamPF139129.2E-122044IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8662148IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
GNRGCAEPES IKNYSEKVKR HICSICHKDF SSGQALGGHK RAHYVKNPET NAEMPTSAAT  60
QQRLADITNM VDL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034405.12e-46PREDICTED: uncharacterized protein LOC104423639
STRINGXP_010034405.17e-46(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.12e-11zinc finger of Arabidopsis thaliana 6