PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC034382.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 103aa    MW: 12064.8 Da    PI: 8.1255
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC034382.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-057394223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +Cp C+++F++   L  H + H
  EcC034382.20 73 PCPVCDERFTSMRALFCHRKIH 94
                  5*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.4E-7126IPR007087Zinc finger, C2H2
SMARTSM003550.23224IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.06E-8224No hitNo description
PROSITE profilePS501578.767224IPR007087Zinc finger, C2H2
PROSITE patternPS000280424IPR007087Zinc finger, C2H2
SuperFamilySSF576672.06E-86794No hitNo description
PROSITE profilePS501579.5567299IPR007087Zinc finger, C2H2
SMARTSM003550.247294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-47496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.7E-47496IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
VYPCKLCDRI YSSGPMLGGH MRCHMDMNLP EREPPLVIDN SSADERRLGY YLRENPKKTW  60
KFSKLKESAQ EKPCPVCDER FTSMRALFCH RKIHWGKDDE SGD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034406.17e-23PREDICTED: uncharacterized protein LOC104423640
STRINGXP_010034401.13e-48(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-08C2H2-like zinc finger protein