PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC034584.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 730aa    MW: 80075.6 Da    PI: 5.8668
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC034584.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.8e-2066121156
                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  EcC034584.10  66 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRQLGLEPLQVKFWFQNKRTQMK 121
                   688999***********************************************999 PP
2START2213.7e-692554751206
                   HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
         START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                   ela +a++el+++a+++ep+W   +    + +n+de+++ f+++ v     ++ ea+r +gv +m++ +lve+l+d++ qW++ +     +a+tlev
  EcC034584.10 255 ELAVAAMEELIRMAQVGEPMWIAGPdgssSVLNEDEYIRAFPRGIVtnptgFKREASRQTGVIIMNHINLVEILMDVN-QWSTIFSsivsRAMTLEV 350
                   57899******************99999999**************9********************************.****************** PP

                   ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
         START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                   +s+g      galq+ +ae+q++splvp R+++fvRy++q+++g+w++vdvS+d  +++p     vR+++ pSg+li++++ng+skvtw+ehv++++
  EcC034584.10 351 LSTGvagnynGALQVVTAEFQVPSPLVPtREVYFVRYCKQHRDGTWAVVDVSLDTLRPNPA----VRCRRKPSGCLIQEMPNGYSKVTWLEHVEVDD 443
                   ************************************************************5....******************************** PP

                   SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
         START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                   r +h+l+++lv+sg+a+gak+wvatl+rqce+
  EcC034584.10 444 RGVHNLYKQLVGSGHAFGAKRWVATLDRQCER 475
                   ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-2246121IPR009057Homeodomain-like
SuperFamilySSF466892.05E-1950123IPR009057Homeodomain-like
PROSITE profilePS5007117.03863123IPR001356Homeobox domain
SMARTSM003895.9E-1964127IPR001356Homeobox domain
CDDcd000861.14E-1866124No hitNo description
PfamPF000468.5E-1866121IPR001356Homeobox domain
PROSITE profilePS5084846.142246478IPR002913START domain
SuperFamilySSF559618.24E-37246477No hitNo description
CDDcd088758.49E-130250474No hitNo description
SMARTSM002341.1E-61255475IPR002913START domain
PfamPF018523.2E-59256475IPR002913START domain
Gene3DG3DSA:3.30.530.205.7E-7324457IPR023393START-like domain
SuperFamilySSF559615.5E-26495722No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MMDIFQQNLM EGGGGPPLHP LDMVQNPSES ELARLREDDF DSTKSGSDNH EGPPSGDDLQ  60
DERRKKKRYH RHTQHQIQEM EAFFKECPHP DDKQRKELGR QLGLEPLQVK FWFQNKRTQM  120
KTQHERHENT QLRSENEKLR ADNMRYREAL TNASCPNCGG PTAIGEMSFD EHHLRLENAR  180
LREEIDRISA IAAKYVGKPI ANYPLLPSSV PPRPLELGFG SFSGQSGVGG DIYGGGDLFR  240
SIPAPTEAEK PMIIELAVAA MEELIRMAQV GEPMWIAGPD GSSSVLNEDE YIRAFPRGIV  300
TNPTGFKREA SRQTGVIIMN HINLVEILMD VNQWSTIFSS IVSRAMTLEV LSTGVAGNYN  360
GALQVVTAEF QVPSPLVPTR EVYFVRYCKQ HRDGTWAVVD VSLDTLRPNP AVRCRRKPSG  420
CLIQEMPNGY SKVTWLEHVE VDDRGVHNLY KQLVGSGHAF GAKRWVATLD RQCERLASAM  480
ATHIPSGDVG VITSPEGRKS MMKLAERMVI SFCAGVSAST AQTWTTLSGT GADDVRVMTR  540
KSVDDPGRPP GIVLCAATSF WLPVSPKQVF DFLRDENSRS EWDILSNGGI VQEMGHIANG  600
RDTGNCVSLL RVNSANSSQS NMLILQESCT DATGSFVVYA PVDIVAMNVV LNGGDPDYVA  660
LLPSGFSILP DGSQGSGEVA SGGSLLTVAF QILVDSVPTA KLSLGSVATV NNLIACTVER  720
IRASLSPENN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16267RRKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721484.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X3
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A058ZZV00.0A0A058ZZV0_EUCGR; Uncharacterized protein
STRINGXP_010038600.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2