PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC034723.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 214aa    MW: 23374.2 Da    PI: 9.4499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC034723.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.2e-071031441055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   + RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  EcC034723.20 103 KARREKISERMKILQDIVPGC----NKVIGKALVLDEIINYIQSLQ 144
                   68******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.45E-784148No hitNo description
Gene3DG3DSA:4.10.280.105.2E-1587161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-1488163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.40593143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-5101149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-5103144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
EARCGGGSRK RRDAEDESAA GSLSTSNGVP NGAGGEKRLK TSGCKDRSGD SKAEGQPSSA  60
KPTDESKPQP EPSKQDYIHV RARRGQATDS HSLAERVTSI PLKARREKIS ERMKILQDIV  120
PGCNKVIGKA LVLDEIINYI QSLQHQVEFL SMKLEAVNSR MNPPIEVFSS KEFGQQPYDT  180
GGMPFGSQAP REYSRGSSPD WLHMQVGGGF DRKM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044684.11e-146PREDICTED: transcription factor bHLH79 isoform X1
SwissprotQ69WS33e-72BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A059D8681e-144A0A059D868_EUCGR; Uncharacterized protein
STRINGXP_010044684.11e-145(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-82BIG PETAL P