PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC034842.110
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28313.2 Da    PI: 8.8216
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC034842.110genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.5e-32959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  EcC034842.110  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSHRGKLYEFCS 59
                   79***********************************************96 PP
2K-box93.43.9e-318917613100
          K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + s+qqe+ kLk+++e Lqr+qR+llGe+L++Ls keL++Le+qL++slk+iRs++++++l+q+ +lq+ke+ l+e+n++L+++l+e
  EcC034842.110  89 LELSSQQEYLKLKARYEALQRTQRNLLGEELGPLSSKELESLERQLDSSLKQIRSTRTQYMLDQLTDLQRKEQHLNEANRTLKQRLME 176
                    45589*******************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.333161IPR002100Transcription factor, MADS-box
CDDcd002658.55E-46276No hitNo description
SuperFamilySSF554551.96E-33275IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.96890180IPR002487Transcription factor, K-box
PfamPF014865.0E-2592174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010289Biological Processhomogalacturonan biosynthetic process
GO:0048364Biological Processroot development
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0019904Molecular Functionprotein domain specific binding
GO:0046872Molecular Functionmetal ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSH RGKLYEFCSS  60
SSMLKTLERY QKCNYGAPEP SISTREAQLE LSSQQEYLKL KARYEALQRT QRNLLGEELG  120
PLSSKELESL ERQLDSSLKQ IRSTRTQYML DQLTDLQRKE QHLNEANRTL KQRLMEGYQA  180
TALQMNPAAA AEEMVYGGRH LAPPHHGHDA FFHPLDCEPT LQIGYPQDPS ASVVTAGPSS  240
SSYMPGWLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A8e-47751771104Developmental protein SEPALLATA 3
4ox0_B8e-47751771104Developmental protein SEPALLATA 3
4ox0_C8e-47751771104Developmental protein SEPALLATA 3
4ox0_D8e-47751771104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022959859.11e-147agamous-like MADS-box protein AGL9 homolog isoform X2
RefseqXP_023004224.11e-147agamous-like MADS-box protein AGL9 homolog isoform X2
RefseqXP_023514991.11e-147agamous-like MADS-box protein AGL9 homolog isoform X1
SwissprotQ8LLR01e-141MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBLV9PDT11e-145V9PDT1_CUCME; MADS-box protein 5
STRINGXP_004140534.11e-147(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-128MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]