PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC035139.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 175aa    MW: 20376.5 Da    PI: 8.496
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC035139.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-1640133198
                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                   ffkv +++++ +++ + +p+ f+++h + +    ++++    s+r+W vkl  r+++++ + +++GW  Fv+  +L +g ++vF+l++r++  ++v 
  EcC035139.10  40 FFKVVIRPSYIEHHVVNVPRWFIRQHiQ-Q---IMEIVTLRHSNRTWLVKL--RNYPSGlMQFSSGWIAFVRGTHLHVGNVCVFELINRDDIVFRVY 130
                   99************************43.3...367888888*********..9999998889************************9999988999 PP

                   EE- CS
            B3  96 vfr 98 
                   +f+
  EcC035139.10 131 IFS 133
                   987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-2033134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-1934133IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-940135IPR003340B3 DNA binding domain
PROSITE profilePS5086312.71740135IPR003340B3 DNA binding domain
PfamPF023622.2E-1440134IPR003340B3 DNA binding domain
CDDcd100175.37E-1540133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
GIGQSRCRAS HPEPNFGGPM SSGPLRSFEL ACEFDSEYPF FKVVIRPSYI EHHVVNVPRW  60
FIRQHIQQIM EIVTLRHSNR TWLVKLRNYP SGLMQFSSGW IAFVRGTHLH VGNVCVFELI  120
NRDDIVFRVY IFSSAGGNLI YVIYSETLGW LWHDMTSMLM IFIVNQRNIH SDNVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-142613234140B3 domain-containing transcription factor VRN1
4i1k_B4e-142613234140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065661.16e-87PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_010065663.12e-87PREDICTED: B3 domain-containing transcription factor VRN1 isoform X4
TrEMBLA0A059BB471e-87A0A059BB47_EUCGR; Uncharacterized protein
STRINGXP_010065661.12e-86(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14804415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-15B3 family protein