PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC035148.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 533aa    MW: 59788.4 Da    PI: 5.9136
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC035148.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.84.9e-28314368156
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                   k +++WtpeLH++Fv+aveqL G ++A+P++il+lmkv+gLt+++v+SHLQkYR++
  EcC035148.20 314 KMKVDWTPELHKKFVHAVEQL-GVDQAIPSRILDLMKVEGLTRHNVASHLQKYRMH 368
                   5689*****************.********************************96 PP
2Response_reg24.21.7e-09201251109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d + + ++ +r+ le  +y +v ++ + +eal  +  k   +++ ++ ++ +    +e+l+  r    +lp i+++ +   +++ +++ +Ga 
  EcC035148.20  20 VLLLDQDSDSASEIRSKLELMDY-VVFTFCNEDEALSAIASKPdsFHIAMVEVSTSSNGSFEFLEAAR----DLPTIMMSNNHCLSTIMKCIALGAV 111
                   7899999999*************.***************777777*******9999999999987654....599********************** PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp  +++l++
  EcC035148.20 112 EFLHKPLCEDKLRN 125
                   *******9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.05E-1516132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-1516165No hitNo description
SMARTSM004480.00818127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011018.7619131IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.0E-620125IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.99E-821131No hitNo description
PROSITE profilePS5129414.683311370IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-27312371IPR009057Homeodomain-like
SuperFamilySSF466892.96E-18312371IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-24314368IPR006447Myb domain, plants
PfamPF002493.5E-8317366IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MVCTASDLQE WKDFPKGLKV LLLDQDSDSA SEIRSKLELM DYVVFTFCNE DEALSAIASK  60
PDSFHIAMVE VSTSSNGSFE FLEAARDLPT IMMSNNHCLS TIMKCIALGA VEFLHKPLCE  120
DKLRNIWQHV AHKAFNAGVS EVSESLKLVK ETPVSMLQRQ LKNEEQNNDE SREMRKLSVH  180
ETDQEMSAAS DKYPAPSTPQ LKGGARLLDD GDCQDQMNGT VEKESGEQDG ESKFVETTCD  240
DSMSENIQEA QGQRDRDVLV KEEDDSADNS KCESMISPLS ENKDRSHDVQ GCNDNLSKAS  300
SLHNSARTRV NRKKMKVDWT PELHKKFVHA VEQLGVDQAI PSRILDLMKV EGLTRHNVAS  360
HLQKYRMHRR HILPKEDERR WPHSRDGVTR SYYPHRPIMA YPTHHPGHPL PPGAGYPVWG  420
APPSNHPAGM QMWGPPGYPP WPSPENWHWK TAYPAMQADV WGCPVMPPSH HGPSFAFPQD  480
EEVIDNIVKE AISKPWLPLP LGLKPPSTDC VLAELSRQGI PSIPPHADRL GPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16319368655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055356.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_010055357.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_010055358.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_010055359.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_010055361.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_010055362.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_010055363.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_018730009.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-141APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A059C1P10.0A0A059C1P1_EUCGR; Uncharacterized protein
STRINGXP_010055356.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-141ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]