PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC035778.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 123aa    MW: 14323.5 Da    PI: 9.7709
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC035778.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.14.4e-29101212109
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                    +Gf+F+Ptdeelv++yLk   +++    e++i++vd++++ PwdLp k     ++k++ +ew+fFs+ ++ky+++k+++r+ + g Wk  gk++++
  EcC035778.30  10 LVGFQFRPTDEELVNQYLKTLGNETV---EQIIPKVDVHQLPPWDLPgKinelsRIKSDGDEWFFFSCLQNKYPQSKQARRTNDYGSWKPMGKTHKI 103
                   68****************86443333...368***************54788887778899*********************9************** PP

           NAM  93 lsk.kgelvglkktLvfy 109
                    +  ++++ glkk+Lvf 
  EcC035778.30 104 RTLdRKNTLGLKKILVFK 121
                   98768888*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-286121IPR003441NAC domain
PROSITE profilePS5100529.8419123IPR003441NAC domain
PfamPF023654.9E-1411121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
SVETSLVDLL VGFQFRPTDE ELVNQYLKTL GNETVEQIIP KVDVHQLPPW DLPGKINELS  60
RIKSDGDEWF FFSCLQNKYP QSKQARRTND YGSWKPMGKT HKIRTLDRKN TLGLKKILVF  120
KKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-18712013120Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064391.14e-74PREDICTED: protein NTM1-like 9
RefseqXP_010064501.14e-74PREDICTED: protein NTM1-like 9
RefseqXP_018725712.14e-74PREDICTED: protein NTM1-like 9
TrEMBLA0A059DC649e-73A0A059DC64_EUCGR; Uncharacterized protein
STRINGXP_010064391.11e-73(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.18e-28NAC 014