PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC035779.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 251aa    MW: 28863.6 Da    PI: 6.7853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC035779.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.21.3e-43121431128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   lppGfrFh tdeel+ +yLk+k+ g++  +  ++i+e+di+++ePw+Lp+  ++  ++ke++ +++ ++ky+++kr+ r+tk+gyWk tgk+++++s
  EcC035779.10  12 LPPGFRFHATDEELLIHYLKPKILGRPgERYYDMIPEIDICEFEPWQLPAmfCHWFNSKELFLYCRVKRKYSNSKRSDRTTKAGYWKVTGKERAIMS 108
                   79*************************6566788***************5343334889************************************** PP

           NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   + ++e +g+kktLvfy+gr pkg++t+Wv hey+l
  EcC035779.10 109 EdTDEPIGIKKTLVFYTGRVPKGKRTNWVSHEYQL 143
                   967788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-478166IPR003441NAC domain
PROSITE profilePS5100548.22412166IPR003441NAC domain
PfamPF023652.4E-2113143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MENTISEAMR TLPPGFRFHA TDEELLIHYL KPKILGRPGE RYYDMIPEID ICEFEPWQLP  60
AMFCHWFNSK ELFLYCRVKR KYSNSKRSDR TTKAGYWKVT GKERAIMSED TDEPIGIKKT  120
LVFYTGRVPK GKRTNWVSHE YQLNPKCLGH NEDEMLPYVA CRIKNKKEKK LMMGHAPTVS  180
PEVYSSSPHA PTASPEVYSS SPHAYTSNVS ETPVNQEGDY SSFCNSPSDE VADNQEAVDA  240
QPEVREAHFI L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-361116716166NO APICAL MERISTEM PROTEIN
1ut4_B5e-361116716166NO APICAL MERISTEM PROTEIN
1ut7_A5e-361116716166NO APICAL MERISTEM PROTEIN
1ut7_B5e-361116716166NO APICAL MERISTEM PROTEIN
4dul_A5e-361116716166NAC domain-containing protein 19
4dul_B5e-361116716166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064990.11e-160PREDICTED: protein NTM1-like 9
TrEMBLA0A059DCT81e-170A0A059DCT8_EUCGR; Uncharacterized protein
STRINGXP_010065386.11e-165(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3439622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-48NAC transcription factor-like 9