PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC035819.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 115aa    MW: 13206.1 Da    PI: 9.7149
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC035819.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.2e-132109297
                   EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE- CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkld 85 
                   +k lt+sd + ++rl + ++f+++h           + ++ ++++++++d++   + ++ + ++ +sg+yvl++GW keFvk  gL +gD v ++  
  EcC035819.10   2 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmneetvrQVESGKGTDVIVRDLDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAAGDEVGIYW- 97 
                   5889*************************9888887555568999*****9987777788888*************999************99995. PP

                   SS.SEE..EEEEE CS
            B3  86 gr.sefelvvkvf 97 
                    + s  e++++++
  EcC035819.10  98 -EpSASEFHFSLL 109
                   .445555577665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00341112IPR003340B3 DNA binding domain
CDDcd100172.33E-171109No hitNo description
SuperFamilySSF1019363.73E-162109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-172112IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-103108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
IKKRLTQSDL GHLSRLLIGR DFVKSHFLRW MNEETVRQVE SGKGTDVIVR DLDTCSEHRL  60
VFVFWASSGS YVLKGGWIKE FVKRRGLAAG DEVGIYWEPS ASEFHFSLLH RANQA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010042934.11e-77PREDICTED: putative B3 domain-containing protein At1g78640
RefseqXP_018729963.12e-78PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLA0A059C5U63e-77A0A059C5U6_EUCGR; Uncharacterized protein
STRINGXP_010042934.15e-77(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.19e-25B3 family protein