PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC036030.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 166aa MW: 18478.1 Da PI: 10.7007

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC036030.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.4e-14	1	40	9	48
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d++l+d+v+++G g+W++ ++ g+ R++k+c++rw++yl EcC036030.10 1 DQKLIDYVQKHGEGNWNSLPKAAGLLRCGKSCRLRWLNYL 40 79********************99**********97 PP
2	Myb_DNA-binding	54.1	3.5e-17	46	91	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l EcC036030.10 46 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 91 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	3.10E-8	1	40	No hit	No description
Pfam	PF00249	2.4E-12	1	40	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-19	1	47	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.1	1	40	IPR017930	Myb domain
SMART	SM00717	0.0017	1	42	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.91E-25	1	87	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.246	41	95	IPR017930	Myb domain
SMART	SM00717	4.2E-16	45	93	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-16	46	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-26	48	95	IPR009057	Homeodomain-like
CDD	cd00167	2.10E-11	48	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
DQKLIDYVQK HGEGNWNSLP KAAGLLRCGK SCRLRWLNYL RPDLKRGNFG EDEEDLIIKL 60 HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLLSKGI IHRRPSAAKI KSSTEDKTVH 120 QSSAAISIKE KGVSPDGDRL DLKLGVSGGP AKHSKPAQSK EINGGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-26	1	95	35	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010032684.1	1e-116	PREDICTED: myb-related protein 308
Swissprot	Q38851	2e-59	MYB6_ARATH; Transcription repressor MYB6
TrEMBL	A0A059CZV3	1e-114	A0A059CZV3_EUCGR; Uncharacterized protein
STRING	XP_010032684.1	1e-115	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	7e-62	myb domain protein 6