PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC036423.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

ERF

Protein Properties

Length: 253aa MW: 26648.5 Da PI: 4.4803

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC036423.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.7	9.4e-16	90	138	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a + a+++l+g EcC036423.10 90 LYRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAFDVAALALKG 138 69*6..668*****843...5*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.6E-9	89	138	IPR001471	AP2/ERF domain
CDD	cd00018	5.98E-18	89	148	No hit	No description
PROSITE profile	PS51032	20.112	90	146	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-18	90	148	IPR016177	DNA-binding domain
SMART	SM00380	8.9E-29	90	152	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.8E-26	90	147	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MLLRPVLWPA SMANQPPGEP QPNPPPPPPP PPAPAIQIPD QPPHNSPSSS SSSSSSSLAT 60 TGDRGGSSPR PMLSPSGSSP LAQSTGRHPL YRGVRSRSGK WVSEIREPRK TTRIWLGTYP 120 TPEMAAAAFD VAALALKGSD AALNFPHDVP NYPVPNSVSA ADIRSAAASA AASRGARTEA 180 EGKEDPVGRP ESASEISQEP GQEFMDEDEL LNMPKLLDDM AEGMLVSPPR TQMASENDSP 240 EDSDGGESLW SYP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-14	88	149	12	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010025136.2	1e-119	PREDICTED: ethylene-responsive transcription factor ERF027
Swissprot	Q9FJ90	4e-49	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A059DK24	1e-118	A0A059DK24_EUCGR; Uncharacterized protein
STRING	XP_010025136.1	1e-137	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	4e-41	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]