PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC036619.60

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 147aa MW: 16503.8 Da PI: 10.2147

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC036619.60	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.4	6.6e-07	121	142	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +L++H+ H EcC036619.60 121 TCEECGATFKKPAYLRKHMLGH 142 6******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.93	120	145	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.0E-4	121	143	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	122	142	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MLVFNNVRNN REVSSFLFAD LISFDRKLIG PGLIWARTGH SFEHRQARPR TTPDLQVQEV 60 PPHFSHPTAP RGQFSSLRRL PMLRKQRGSF RAASSDATID EVEAAMAQGV EVKEGAKANN 120 TCEECGATFK KPAYLRKHML GHSLEVC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	4e-10	transcription factor IIIA