PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC037000.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 507aa    MW: 55368.4 Da    PI: 6.5133
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC037000.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30154211260
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                   dDgynWrKYGqK+vkg efprsYY+Ct+++C+vkk  er+  d++++ei+Y+g+H+h+k
  EcC037000.30 154 DDGYNWRKYGQKHVKGCEFPRSYYKCTYPNCEVKKLFERAP-DGHITEIIYKGTHDHPK 211
                   8****************************************.***************85 PP
2WRKY106.51.4e-33331389159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  EcC037000.30 331 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 389
                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.58E-24148212IPR003657WRKY domain
PROSITE profilePS5081122.24148212IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-26148212IPR003657WRKY domain
SMARTSM007741.8E-31153211IPR003657WRKY domain
PfamPF031065.0E-23154210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37316391IPR003657WRKY domain
SuperFamilySSF1182901.96E-29323391IPR003657WRKY domain
PROSITE profilePS5081138.825326391IPR003657WRKY domain
SMARTSM007743.1E-39331390IPR003657WRKY domain
PfamPF031062.9E-26332389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MVEPSPTTGS LIKPHMMNGL IGSNSDTRLA NSGCPDNFDE GRSGIFEFKP LATSSLVPTE  60
AKHQGSEQAV KVSGQRHSQP FASLSSVQSD LAVSSKELCL SVPTQAVSSG ASPLAEADPD  120
GLLGRKEQPN NVMHVTQLDN KGNGPSVMTE RLSDDGYNWR KYGQKHVKGC EFPRSYYKCT  180
YPNCEVKKLF ERAPDGHITE IIYKGTHDHP KPQPSRRFTG GATMPIQEER SDRFSFIPAV  240
ESTSTVYGET SYNVETDGTP ELSPVAENDE TIEGAASLSN RIQNEVDDGD DDDPFLKRRR  300
LDIGGEDVTP VVKPIREPRV VVQTLSEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTNA  360
GCPVRKHVER ASHDPKAVIT TYEGKHNHDV PTAKSSSHDT AAPSALSGLP RTRSEGETVS  420
LDLGVGRSAA SEMASAEKQQ ILRPNPVQSR IHYASSALDA VQATPVTAYH GFLNGGINQF  480
GYRENLTEGH SKSTEFLQNM GRILTGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37152391877Probable WRKY transcription factor 4
2lex_A8e-37152391877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296300KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060240.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV01e-146WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A059BL780.0A0A059BL78_EUCGR; Uncharacterized protein
STRINGXP_010060240.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-149WRKY family protein