PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC037035.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 261aa    MW: 29321.9 Da    PI: 6.1024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC037035.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-07157204455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR +i++++  L++l+P +     + +  a +L + ++Y+ksLq
  EcC037035.30 157 SHSLAERVRRGKIKDRLRYLQDLVPGC----YQTMGMAVMLDEIINYVKSLQ 204
                   8*************************9....477889999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.92E-9151208No hitNo description
SuperFamilySSF474593.66E-16151221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.792153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-16153216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-5157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-6159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0043531Molecular FunctionADP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAEFARELQC FQPFSSLLDI DMVEPTNDFT GPNPSAINSH PSSDFHSSAI LSSDNPLFLQ  60
PVVPDFPSNW ANVFPGIFHP YEQNLAPLSA GDDSYEERKR KVSGLPAESS SGIVSSPLQK  120
SDTESLGKAK RRKRSEKEEK PKEVVHVRAR RGQATDSHSL AERVRRGKIK DRLRYLQDLV  180
PGCYQTMGMA VMLDEIINYV KSLQSQVEFL SMKLEAASSC YDFNSEADAI ETLQREQMYG  240
NRELESLMRI GHANFHPSSH P
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032051.10.0PREDICTED: transcription factor BEE 1
SwissprotQ8GWK73e-51BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A059D0Y40.0A0A059D0Y4_EUCGR; Uncharacterized protein
STRINGXP_010032051.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.12e-49BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]