PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC037060.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 145aa MW: 15735.8 Da PI: 10.4755

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC037060.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.4	6.6e-13	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky EcC037060.10 67 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 111 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.03E-17	61	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.18	62	116	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.8E-19	65	114	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.5E-6	65	117	IPR009057	Homeodomain-like
SMART	SM00717	6.5E-10	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-10	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.63E-8	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MVSKNPSPAE GFYLDPNGMA LPGFGPFSAA NAAAAAAAAA AAASANSASS EDLAKKVRKP 60 YTITKSRESW TEPEHDKFLE ALQLFDRDWK KIEAFVGSKT VIQIRSHAQK YFLKVQKSGT 120 NEHLPPPRPK RKAAHPYPQK ASKNG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440102.1	8e-83	PREDICTED: protein REVEILLE 6-like isoform X1
Refseq	XP_012440103.1	8e-83	PREDICTED: protein REVEILLE 6-like isoform X1
Refseq	XP_012440104.1	8e-83	PREDICTED: protein REVEILLE 6-like isoform X1
Refseq	XP_012440108.1	8e-83	PREDICTED: protein REVEILLE 6-like isoform X3
Refseq	XP_012440109.1	7e-83	PREDICTED: protein REVEILLE 6-like isoform X4
Refseq	XP_016737436.1	6e-83	PREDICTED: protein REVEILLE 6-like isoform X2
Refseq	XP_017634607.1	7e-83	PREDICTED: protein REVEILLE 6 isoform X2
Swissprot	Q8H0W3	5e-72	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A059DJP6	2e-81	A0A059DJP6_EUCGR; Uncharacterized protein
TrEMBL	A0A059DJQ2	4e-81	A0A059DJQ2_EUCGR; Uncharacterized protein
TrEMBL	A0A0B0P468	2e-81	A0A0B0P468_GOSAR; Transcription factor ASG4-like protein
TrEMBL	A0A0D2RNE3	2e-81	A0A0D2RNE3_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2T7Z5	2e-81	A0A0D2T7Z5_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8NEJ8	1e-81	A0A1U8NEJ8_GOSHI; protein REVEILLE 6-like isoform X2
TrEMBL	A0A1U8NHW8	2e-81	A0A1U8NHW8_GOSHI; protein REVEILLE 6-like isoform X1
TrEMBL	A0A2P5R831	2e-81	A0A2P5R831_GOSBA; Uncharacterized protein
STRING	Gorai.008G274500.1	3e-82	(Gossypium raimondii)
STRING	XP_010060421.1	7e-82	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	4e-54	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]