PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC037099.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 243aa    MW: 27796.3 Da    PI: 9.12
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC037099.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-161055148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ T++E++l+v+++++lG++ W++Ia +++  Rt++++k++w+++l
     EcC037099.10 10 RGNITPDEEDLIVRLHALLGNR-WSLIAGRLP-SRTDNEIKNYWNSHL 55
                     7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-14165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-24159IPR009057Homeodomain-like
PROSITE profilePS5129425.25559IPR017930Myb domain
SMARTSM007171.6E-15957IPR001005SANT/Myb domain
PfamPF002499.1E-151055IPR001005SANT/Myb domain
CDDcd001671.69E-111455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNYLRPDIKR GNITPDEEDL IVRLHALLGN RWSLIAGRLP SRTDNEIKNY WNSHLSKRVN  60
DNNHQRNRNN RGVKGPKKRN IVTANKVRSF TNKQKQEMTN EKGEKKLTKI KVHQPKPTRV  120
SAVARNNICN SLPWGSCVNT SNNNILEEQL PQQLPPYPSS GLTARSSASD IEGVLVLDED  180
LINVSGECHY YDHHQETTSS REILIPTREE NDSMLQKIFE DFQELLGAKD SVQMETFVNS  240
LLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1226051109B-MYB
3zqc_A1e-1217845129MYB3
3zqc_D1e-1217845129MYB3
3zqc_G1e-1217845129MYB3
3zqc_J1e-1217845129MYB3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053095.11e-178PREDICTED: myb-related protein 308
TrEMBLA0A059CGF91e-176A0A059CGF9_EUCGR; Uncharacterized protein
STRINGXP_010053095.11e-177(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3441522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-29myb domain protein 5