PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC037372.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 294aa MW: 32334.5 Da PI: 6.827

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC037372.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.8	1.6e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk +rrkC+++Cv+apyfpa+qp+kfa+vh++FGasnv kll++l+ ++reda++sl+yeAe+r+rdP+yG+vg+i+ lq++l+ l++el+ + EcC037372.10 7 PCAACKCQRRKCTPECVFAPYFPADQPQKFAYVHEVFGASNVAKLLNELHVSQREDAANSLTYEAEVRLRDPIYGCVGLISILQHKLNLLQKELSNA 103 7**********************************************************************************************99 PP DUF260 98 kee 100 k+e EcC037372.10 104 KKE 106 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.653	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MSSLSSPCAA CKCQRRKCTP ECVFAPYFPA DQPQKFAYVH EVFGASNVAK LLNELHVSQR 60 EDAANSLTYE AEVRLRDPIY GCVGLISILQ HKLNLLQKEL SNAKKELAAY MGPNSMMPTT 120 VQPPGAMFPA GNPLSSMMAL HNTVPVITTR GKGDALWHGG GSTLVDQQLL LEEHQLAAIA 180 AAKEQQDMGR VCEQQQIRRH HDQQQLQSQH ETKYRTNGSD CVGEFVSAIQ YHTANNAIPP 240 GPASPSLALG SFMNPYHEQA HRLSLKSEQA CIEKHQEQRS GGMEGQNDDV GLSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-44	6	110	10	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-44	6	110	10	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026421.1	0.0	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FKZ3	5e-60	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A0B0PS92	7e-75	A0A0B0PS92_GOSAR; LOB domain-containing 36-like protein
STRING	XP_010026421.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-62	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]