PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC037435.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 245aa    MW: 27175.5 Da    PI: 8.295
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC037435.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1877131256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   rk+ ++++eq  +Lee F+++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  EcC037435.50  77 RKKLRLSREQSLVLEETFKEHNTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTK 131
                   778899***********************************************98 PP
2HD-ZIP_I/II1284.1e-4177166191
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                   +kk+rls+eq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtktkq+E+d+e+Lkr++d+l++en+rL+kev+eLr +l
  EcC037435.50  77 RKKLRLSREQSLVLEETFKEHNTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTKTKQTEVDCEYLKRCCDNLTQENKRLQKEVQELR-AL 166
                   69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.4E-11247IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.4E-1960133IPR009057Homeodomain-like
SuperFamilySSF466894.6E-2064135IPR009057Homeodomain-like
PROSITE profilePS5007117.6773133IPR001356Homeobox domain
SMARTSM003893.6E-1775137IPR001356Homeobox domain
PfamPF000464.3E-1677131IPR001356Homeobox domain
CDDcd000861.68E-1677134No hitNo description
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PfamPF021837.8E-12133167IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.6E-25133176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034314Biological ProcessArp2/3 complex-mediated actin nucleation
GO:0042545Biological Processcell wall modification
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0005885Cellular ComponentArp2/3 protein complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0030599Molecular Functionpectinesterase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
TNSKTRPLFG GVGVNRDILV VDLDDDNHVS SPNSTVSSIS GKRSERDPHG DNEVEAERTS  60
CSCESIEEDG SGGDGARKKL RLSREQSLVL EETFKEHNTL NPKQKLALAK QLNLSPRQVE  120
VWFQNRRART KTKQTEVDCE YLKRCCDNLT QENKRLQKEV QELRALKLSP QLYMHMNPPT  180
TLTMCPSCQR VSVPSSSLSP PSSSSVTASV IGPVGPVHNP FSQSGPSINP WARLQMQQGL  240
NNLHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARTKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056406.11e-180PREDICTED: homeobox-leucine zipper protein ATHB-4
SwissprotP466021e-86HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A059C3T51e-179A0A059C3T5_EUCGR; Uncharacterized protein
STRINGXP_010056406.11e-180(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.13e-55homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]