PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC037620.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 204aa    MW: 22742.6 Da    PI: 5.2777
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC037620.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-081644129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +g+WT eEd++l d+++ +G g W++ a+
     EcC037620.50 16 KGPWTLEEDLILMDYIANHGEGVWNSLAK 44
                     79************************997 PP
2Myb_DNA-binding331.4e-10811081746
                      HHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  17 kqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++ + W+ Ia++++ gRt++++k++w++
     EcC037620.50  81 TRHPER-WSEIAKHLP-GRTDNEIKNYWRT 108
                      579999.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-22937IPR009057Homeodomain-like
PROSITE profilePS500909.97611110IPR017877Myb-like domain
SMARTSM007176.8E-1315112IPR001005SANT/Myb domain
SuperFamilySSF466895.86E-1316109IPR009057Homeodomain-like
PfamPF002491.7E-61644IPR001005SANT/Myb domain
CDDcd001672.34E-818108No hitNo description
PfamPF002491.7E-882108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2286118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0003824Molecular Functioncatalytic activity
GO:0005525Molecular FunctionGTP binding
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDKKPCYRTQ DPQVRKGPWT LEEDLILMDY IANHGEGVWN SLAKAADPFS GVVFMILHID  60
HVRSSTHRKE LPAAMVELPP TRHPERWSEI AKHLPGRTDN EIKNYWRTKI QKHIIKQSET  120
EINDLTIPPS SANACTDHRG VSAANTIEIA CSPPSDQGGS GETMLSALPP AQEPNDSACW  180
SVEDLWPIQS LISGMGDDAQ YYSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029159.11e-115PREDICTED: myb-related protein 340
TrEMBLA0A059APX01e-113A0A059APX0_EUCGR; Uncharacterized protein
STRINGXP_010029159.11e-114(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.16e-41myb domain protein 24