PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC037703.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 318aa    MW: 35740.9 Da    PI: 10.5106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC037703.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.7e-16125172152
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                   s ykGVr+++ +g+++AeIrdp    +r  r++lg+f taeeAa a+ + +++
  EcC037703.20 125 SEYKGVRRRP-WGKYAAEIRDP----IRkVRVWLGTFNTAEEAALAYQRKKLE 172
                   569*******.**********7....246******************887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-16125173IPR016177DNA-binding domain
CDDcd000184.08E-22125173No hitNo description
PROSITE profilePS5103219.243126185IPR001471AP2/ERF domain
PfamPF008472.0E-10126173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-22126173IPR001471AP2/ERF domain
SMARTSM003802.3E-20126180IPR001471AP2/ERF domain
PRINTSPR003672.7E-10127138IPR001471AP2/ERF domain
PRINTSPR003672.7E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
QVKMPRIDRR LWHPITSCKK VKGKRPGDEK NLEHVRRIRV MYNDPDATDS SSSDDEGMYI  60
AQGGVFKQNK QVIKEIVIPV NSHKSSGEGC SRTNNGSQKY ISISKKFGCA ASAGQEKNNV  120
PPPPSEYKGV RRRPWGKYAA EIRDPIRKVR VWLGTFNTAE EAALAYQRKK LEFDALSVPG  180
KNNTTCQHLT GPAFLVPSPS SVLDVPSSSS SGNRHEVSAL EQRGKDKVQI FGNARSEPHL  240
DNDSCIQEFF LEPVPSMSSL RSFIAPRSFI VAAWTRICCS RMNLTMFFRM ELRELTRILA  300
RASLARTRCL ILRTSRSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-14127168345ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-14127168648ATERF1
3gcc_A2e-14127168648ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031938.11e-180PREDICTED: ethylene-responsive transcription factor ERF119
RefseqXP_010031952.11e-180PREDICTED: ethylene-responsive transcription factor ERF119
RefseqXP_018723292.11e-180PREDICTED: ethylene-responsive transcription factor ERF119
RefseqXP_018723293.11e-180PREDICTED: ethylene-responsive transcription factor ERF119
TrEMBLA0A059CZR51e-178A0A059CZR5_EUCGR; Uncharacterized protein
STRINGXP_010031938.11e-179(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-22ERF family protein