PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC037763.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 322aa MW: 36192.4 Da PI: 7.4525

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC037763.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.5	1.7e-55	7	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhP+deel+++yL++kv++k+++ ++i +vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkd+e+++ g EcC037763.10 7 LPPGFRFHPSDEELITYYLTPKVSEKSFTS-KAIVDVDLNKCEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATRAGYWKTTGKDREIFR-AG 101 79***********************999.88***********988999************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfykgrap+gek++Wvmheyrl EcC037763.10 102 LIVGMKKTLVFYKGRAPRGEKSNWVMHEYRL 132 9**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-63	5	152	IPR003441	NAC domain
PROSITE profile	PS51005	59.495	7	152	IPR003441	NAC domain
Pfam	PF02365	1.1E-28	8	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEAENCLPPG FRFHPSDEEL ITYYLTPKVS EKSFTSKAIV DVDLNKCEPW DLPGKASMGE 60 KEWYFFSLRD RKYPTGLRTN RATRAGYWKT TGKDREIFRA GLIVGMKKTL VFYKGRAPRG 120 EKSNWVMHEY RLQSEHPCRP TDGWVVCRVF QKSVAAKRLQ TASSPPSPDS PNGEDTTADY 180 YGDQVETNNN SPSTIIATSG AFSNLPSGLA CNSYTSLNNN LNWPTTREPT SLLPPSWPSG 240 FPSLNSPWNT LLLKALQLRT FQPGEVTATM PNYSLPSHGT SPFAHDPSTN YRGDNSLEPF 300 EPGINQEQQV LQFNWTTPYE GN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-53	7	158	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-53	7	158	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-53	7	158	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-53	7	158	17	171	NO APICAL MERISTEM PROTEIN
4dul_A	3e-53	7	158	17	171	NAC domain-containing protein 19
4dul_B	3e-53	7	158	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036890.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 2
Refseq	XP_010036891.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 2
Refseq	XP_010036892.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 2
Swissprot	Q9FLJ2	2e-75	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A059A4F6	0.0	A0A059A4F6_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010036890.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	8e-97	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]