PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC038312.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 615aa    MW: 68752.3 Da    PI: 5.0423
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC038312.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.7e-10419464555
                   HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   h   E r R++iN+ f+ L +++P  +      K++K++iL  ++eY+k+Lq
  EcC038312.30 419 HTLSESRQREKINEQFSVLNSIVPLvN------KVDKISILDNTIEYVKELQ 464
                   7888999******************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-4616193IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088813.656414463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-13419474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7419464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-14419473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-9419468No hitNo description
SMARTSM003531.2E-9420469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006177Biological ProcessGMP biosynthetic process
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003922Molecular FunctionGMP synthase (glutamine-hydrolyzing) activity
GO:0005506Molecular Functioniron ion binding
GO:0005524Molecular FunctionATP binding
GO:0016462Molecular Functionpyrophosphatase activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0030246Molecular Functioncarbohydrate binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MSAGVQNQGT IKEHFKEQLA LAVRNIQWSY AIFWSISAAQ LGVLEWGGGY YNGDIKTRRM  60
TQAIELDGGD HMDLHRSEQL RELYESLSGS EPNPQTSRRP SVALSPEDLA DAEWYYLVCM  120
SFIFNIGQCL PGQSLATGKL IWLCNAHCAD SKVFSRSLLA KTVVCFPFLD GVIELGTTDP  180
VLEDPNLIQR VKTYLLESSD LRRSDPCARD NTEETIMISV EAEEGITSLN PNSNGLDPNP  240
QLDDSCIIGE LYGVASQIQS WQIKNDELSY HIHQSGNSKD STSQSFLETG TAISIPNFEK  300
SKDHWPGNLQ ECNNEELNRV DLRADGLHYQ TVLSSILKTS NGLRSGPHRE WGEPESGFTG  360
WKKGQLKWQR EKGVPQMLLK KILLEVPQLH ARSMLDISEV SCKRDGLWMA LTDELSPDHT  420
LSESRQREKI NEQFSVLNSI VPLVNKVDKI SILDNTIEYV KELQRRAEEL ESSRTSNGLL  480
AISEGKPQES TERTSDNCGN PRTGLSKQPI VKKRKAHNCD TTETDNDYLR DIPIDYLSVG  540
VNDEDVLIEM RCLWREGVLL EIIEALSHSR LDSHSVQSLS SNGILSVTIK SKRSTTTKTT  600
AATIKQALQG VAQNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-1471955192Transcription factor MYC3
4rqw_B4e-1471955192Transcription factor MYC3
4rru_A7e-14719144227Transcription factor MYC3
4rs9_A4e-1471955192Transcription factor MYC3
4ywc_A7e-14719144227Transcription factor MYC3
4ywc_B7e-14719144227Transcription factor MYC3
4yz6_A4e-1471955192Transcription factor MYC3
5t0f_A4e-1471915188Transcription factor MYC3
5t0q_A4e-1471915188Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018729602.10.0PREDICTED: transcription factor GLABRA 3 isoform X1
RefseqXP_018729603.10.0PREDICTED: transcription factor GLABRA 3 isoform X1
RefseqXP_018729604.10.0PREDICTED: transcription factor GLABRA 3 isoform X1
TrEMBLA0A059C1170.0A0A059C117_EUCGR; Uncharacterized protein
STRINGXP_010055649.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-159bHLH family protein