PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC038472.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 281aa    MW: 31255.6 Da    PI: 4.6187
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC038472.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.51.1e-21211264155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   k+rl Wt+eL e+F+ a++ L G + A Pk+il+lm+v+ L  + v+SHLQkYRl
  EcC038472.40 211 KTRLTWTNELEEKFLGAIQLL-GVDSAQPKKILQLMNVPNLKKASVASHLQKYRL 264
                   68*******************.********************************8 PP
2Response_reg58.92.8e-20321401109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vd + + + ++ ++l   gy +v +a++  +al +++e++   Dlil+ i +p+ d +e+l ++ +++ +lp+i++ta ++e ++l al  Ga+
  EcC038472.40  32 VLVVDGDSATLAIISRMLLMFGY-KVLTAKSTGDALSIIQERQdsLDLILTEIHLPDADKFEVLDKLGRAS-NLPVIIMTADNNEGTMLGALLNGAS 126
                   89*********************.***************999999**********************7766.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                    +l Kp+++ e+++
  EcC038472.40 127 LYLLKPISKIEIRD 140
                   ********999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.7E-2629166No hitNo description
SuperFamilySSF521727.54E-2530145IPR011006CheY-like superfamily
SMARTSM004487.2E-1630142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.87631146IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-1532140IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.88E-2033143No hitNo description
SuperFamilySSF466891.52E-15209267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-24209268IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-20211264IPR006447Myb domain, plants
PfamPF002491.2E-6213263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000154Biological ProcessrRNA modification
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006499Biological ProcessN-terminal protein myristoylation
GO:0010064Biological Processembryonic shoot morphogenesis
GO:0040007Biological Processgrowth
GO:0005829Cellular Componentcytosol
GO:0005840Cellular Componentribosome
GO:0000179Molecular FunctionrRNA (adenine-N6,N6-)-dimethyltransferase activity
GO:0003677Molecular FunctionDNA binding
GO:0004379Molecular Functionglycylpeptide N-tetradecanoyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSPLPNEATA EVAYSIKSRV QYTDLVPAGV EVLVVDGDSA TLAIISRMLL MFGYKVLTAK  60
STGDALSIIQ ERQDSLDLIL TEIHLPDADK FEVLDKLGRA SNLPVIIMTA DNNEGTMLGA  120
LLNGASLYLL KPISKIEIRD LWQFSFMRKR DQMAQVTEDS TDQDSPKEEG DDEPESQLPA  180
KQGESRPRKQ ECEEVDGDKE DDGANLQPHK KTRLTWTNEL EEKFLGAIQL LGVDSAQPKK  240
ILQLMNVPNL KKASVASHLQ KYRLALKQDQ DTILKTVHPE S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16210268462ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054846.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLA0A067JXK62e-82A0A067JXK6_JATCU; Uncharacterized protein
STRINGXP_010054846.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-53response regulator 2