PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC038512.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 236aa    MW: 26313.2 Da    PI: 4.7661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC038512.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-18118170156
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   + y+GVr+++ +g+++AeIrdp++ng  +r +lg++ t++eA  a+++a+ +++g+
  EcC038512.10 118 CLYRGVRRRP-WGKYAAEIRDPKKNG--ARRWLGTYETPQEAGLAYDRAAFAMRGA 170
                   56********.***********9998..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.99E-30118179No hitNo description
PfamPF008471.9E-12118169IPR001471AP2/ERF domain
SMARTSM003809.9E-33119183IPR001471AP2/ERF domain
PROSITE profilePS5103222.484119177IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-22119178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-30120178IPR001471AP2/ERF domain
PRINTSPR003674.4E-13120131IPR001471AP2/ERF domain
PRINTSPR003674.4E-13159179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MYSASSTVSE SDVALLERIR QHLLDDDDDF ETLAKIAENV QFHCPDSSFI TFPPLETTMS  60
FEANDDDADV HHDPLKDAVG FESPSSLNEQ PVVDYGHVEA NEAMPAVMRE CDTQPGECLY  120
RGVRRRPWGK YAAEIRDPKK NGARRWLGTY ETPQEAGLAY DRAAFAMRGA KARLNFPHLI  180
GCDEVEPVRV TRKRHRSPEA GSGALDSKCR KEDSIGSAGD PEKLNGYVMS FQWSGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-26120184670ATERF1
3gcc_A1e-26120184670ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018728766.11e-165PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A059C5A01e-106A0A059C5A0_EUCGR; Uncharacterized protein
STRINGXP_010058506.11e-127(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-41ethylene-responsive element binding factor 13