PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC038558.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 150aa    MW: 17480.9 Da    PI: 10.4311
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC038558.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.37.3e-37151451127
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                   lp+GfrF+Ptd+elv++yLk   +++    e++i+evd++++ PwdLp k     ++k++ +ew+fF + ++ky++++r++ + + g Wk tgk ++
  EcC038558.10  15 LPVGFRFRPTDNELVNQYLKTLGNETV---EQIIPEVDVHQLPPWDLPgKinelsRIKSDGDEWFFFGRLQNKYPQSNRARTTNDYGSWKPTGKPHK 108
                   79*****************86443333...368***************54788887778899**************999999999************ PP

           NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                   + ++ ++++ glkk+Lvf k ++pk  +t+Wv+hey 
  EcC038558.10 109 IRTQdRKNTLGLKKILVFKKRQSPKNAHTKWVLHEYG 145
                   *99977888***************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3710149IPR003441NAC domain
PROSITE profilePS5100538.91515150IPR003441NAC domain
PfamPF023656.3E-2016145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
RVRSVASLET SLVDLPVGFR FRPTDNELVN QYLKTLGNET VEQIIPEVDV HQLPPWDLPG  60
KINELSRIKS DGDEWFFFGR LQNKYPQSNR ARTTNDYGSW KPTGKPHKIR TQDRKNTLGL  120
KKILVFKKRQ SPKNAHTKWV LHEYGILNDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-261314413138Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064391.13e-93PREDICTED: protein NTM1-like 9
RefseqXP_010064501.13e-93PREDICTED: protein NTM1-like 9
RefseqXP_018725712.13e-93PREDICTED: protein NTM1-like 9
TrEMBLA0A059DC647e-92A0A059DC64_EUCGR; Uncharacterized protein
STRINGXP_010064391.11e-92(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.22e-36NAC 014