PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC038724.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

ZF-HD

Protein Properties

Length: 57aa MW: 6337.15 Da PI: 4.551

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC038724.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	62.1	1.1e-19	1	47	9	57
ZF-HD_dimer 9 ClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ClkNh +slG +a+DGC Efmp +egt++ ++C AC CH nF +e EcC038724.10 1 CLKNHSVSLGNYAIDGCAEFMPR--DEGTPEFFQCIACCCHLNFNWKEI 47 ********************9..779**************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51523	17.982	1	46	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.7E-17	1	46	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-16	1	46	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-9	1	46	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 57 aa Download sequence Send to blast
CLKNHSVSLG NYAIDGCAEF MPRDEGTPEF FQCIACCCHL NFNWKEIIAH GGSELES

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018715486.1	2e-22	PREDICTED: zinc-finger homeodomain protein 6-like
Swissprot	Q9SB61	7e-12	ZHD2_ARATH; Zinc-finger homeodomain protein 2
STRING	XP_010026173.1	2e-21	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	9e-15	homeobox protein 33

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]