PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC039113.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 133aa    MW: 15647.2 Da    PI: 10.6634
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC039113.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.8e-141966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +lv ++ ++G  +W+  a+  g+ Rt+k+c++rw +yl
     EcC039113.30 19 KGAWSAEEDRKLVAYIMRYGVWNWTHMAEPAGLARTGKSCRLRWMNYL 66
                     79********************************************97 PP
2Myb_DNA-binding55.71.1e-1774115346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + T+eE+e++++++k lG++ W+tIa++++ gRt++++k++w++
     EcC039113.30  74 NVTKEEEEIIIKLHKVLGNR-WATIASRLP-GRTDNEIKNYWNT 115
                      669*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1931466IPR017930Myb domain
SuperFamilySSF466897.19E-3017113IPR009057Homeodomain-like
SMARTSM007176.7E-111868IPR001005SANT/Myb domain
PfamPF002492.4E-131966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-232073IPR009057Homeodomain-like
CDDcd001671.91E-82166No hitNo description
PROSITE profilePS5129424.19667121IPR017930Myb domain
SMARTSM007172.0E-1671119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2574121IPR009057Homeodomain-like
PfamPF002495.6E-1576115IPR001005SANT/Myb domain
CDDcd001673.25E-1176117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MARYPRVDKI SSSSKTVKKG AWSAEEDRKL VAYIMRYGVW NWTHMAEPAG LARTGKSCRL  60
RWMNYLRPNI KHGNVTKEEE EIIIKLHKVL GNRWATIASR LPGRTDNEIK NYWNTRLKKR  120
FIQEKLEMPI ACD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31191217108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054183.11e-89PREDICTED: transcription factor WER-like
SwissprotQ9M0J58e-47MYB41_ARATH; Transcription factor MYB41
TrEMBLA0A059AM799e-78A0A059AM79_EUCGR; Uncharacterized protein
STRINGXP_010054183.14e-89(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-43myb domain protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]