PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC039183.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 177aa    MW: 20662.8 Da    PI: 9.3507
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC039183.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.8e-27959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  k+i+n + rqvtfskRr g++KKAeELSvLCda+v++i+fs tgkly++ss
  EcC039183.10  9 KKIDNLTARQVTFSKRRRGLIKKAEELSVLCDADVSLIVFSATGKLYDFSS 59
                  68***********************************************96 PP
2K-box516.2e-181011712898
         K-box  28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   +    +++R+++GedLe L+++eL qLe++Le +l+ + + K+e   ++i++lq+ke +l ++nk+L++++
  EcC039183.10 101 VYDRAHKLRQMKGEDLEGLNVEELDQLEKKLEAGLSLVIKNKEEKTWNEINKLQRKEAQLIKQNKQLKQEV 171
                   44445789************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.072161IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-26323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-30385IPR002100Transcription factor, MADS-box
PfamPF003195.8E-241057IPR002100Transcription factor, MADS-box
CDDcd002654.05E-311275No hitNo description
PRINTSPR004045.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.59487177IPR002487Transcription factor, K-box
PfamPF014861.3E-1495171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAKEKIKIKK IDNLTARQVT FSKRRRGLIK KAEELSVLCD ADVSLIVFSA TGKLYDFSSS  60
RMEDTLTRYY GFHSNKVEKS VQPCLALEIE NTNREMLHEE VYDRAHKLRQ MKGEDLEGLN  120
VEELDQLEKK LEAGLSLVIK NKEEKTWNEI NKLQRKEAQL IKQNKQLKQE VRLLPDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-17169169MEF2C
5f28_B1e-17169169MEF2C
5f28_C1e-17169169MEF2C
5f28_D1e-17169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061527.11e-113PREDICTED: MADS-box protein JOINTLESS isoform X1
RefseqXP_018732297.11e-113PREDICTED: MADS-box protein JOINTLESS isoform X1
SwissprotQ9FUY61e-64JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A059BQW41e-112A0A059BQW4_EUCGR; Uncharacterized protein
STRINGXP_010061527.11e-113(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]