PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC039244.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 229aa    MW: 26408.5 Da    PI: 9.8324
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC039244.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.11e-50151572128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   +pGfrFhPtdeelv +yLk+k++++ + + e+ik++diyk++PwdLpk +++ +ekewyf+++rd+ky+++ r+nr+t+ g+Wkatg+d++++s+  
  EcC039244.20  15 MPGFRFHPTDEELVGFYLKRKIKKQAICV-EIIKQLDIYKYDPWDLPKlATTLGEKEWYFYCPRDRKYRNSARPNRVTRGGFWKATGTDRPIYSSlq 110
                   69************************999.89***************535566999**************************************876 PP

           NAM  96 ....kgel............vglkktLvfykgrapkgektdWvmheyrl 128
                       +  +            +glkk+Lvfykgra kg+ktdW+mhe+rl
  EcC039244.20 111 qlnsS--NvdvtsikcsnniIGLKKSLVFYKGRAGKGVKTDWMMHEFRL 157
                   66550..1555666666666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-5414188IPR003441NAC domain
PROSITE profilePS5100553.55314188IPR003441NAC domain
PfamPF023654.9E-2616157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEERHEGETM EELIMPGFRF HPTDEELVGF YLKRKIKKQA ICVEIIKQLD IYKYDPWDLP  60
KLATTLGEKE WYFYCPRDRK YRNSARPNRV TRGGFWKATG TDRPIYSSLQ QLNSSNVDVT  120
SIKCSNNIIG LKKSLVFYKG RAGKGVKTDW MMHEFRLPSL SDLAATPLPS RKSLPAHDSW  180
AICRIFKKPK STTQKALSHS LCLYPPSATP PPSDHHHHIP SPCPQDKFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-4911881168Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044741.11e-171PREDICTED: protein FEZ-like
SwissprotQ9FIW51e-85NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A0D2SGR32e-96A0A0D2SGR3_GOSRA; Uncharacterized protein
TrEMBLW6J8Y62e-96W6J8Y6_GOSHI; NAC domain protein NAC50
STRINGXP_010044741.11e-170(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.19e-86NAC domain containing protein 94