PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC039516.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 298aa    MW: 30991.1 Da    PI: 4.4974
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC039516.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.68.4e-14272298127
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCG 27 
                   C +C+t kTp+WR gp g+ktLCnaCG
  EcC039516.20 272 CLHCQTDKTPQWRTGPMGPKTLCNACG 298
                   99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-4266298IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.306266298IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-10267298No hitNo description
Gene3DG3DSA:3.30.50.102.8E-11270298IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.88E-10271298No hitNo description
PfamPF003202.3E-11272298IPR000679Zinc finger, GATA-type
PROSITE patternPS003440272297IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004045Molecular Functionaminoacyl-tRNA hydrolase activity
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEAPEIKAEA PEFFQPGFCS PQFAPERRHS LDGKAGGGCC GDPFMVDDLL DFSTTDDAVG  60
GGGCGGGGGD GAFDNVTGSS TDSNVTAMDS CNSSFSGYDP NFGDGIGGCH RGFAEGHFAS  120
DLCVPYDDLA ELEWLSNFAE ESFSSEDLQK LQLISGMKAR PDAAAAYETT AREFQPEPNR  180
GGPIFHPDMS VPAKARSKRS RAAPGSWSSR LLVLSQSDPA PDDDGAGGPG GVPRPVAGKK  240
TIRAAPKKKQ PGLDGPDGPD GPDVGGGEVR RCLHCQTDKT PQWRTGPMGP KTLCNACG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047283.10.0PREDICTED: GATA transcription factor 12
TrEMBLA0A059CL940.0A0A059CL94_EUCGR; GATA transcription factor
STRINGXP_010047283.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-39GATA transcription factor 9